Abstract
Cerebellar abnormalities are commonly reported in autism spectrum disorder (ASD). Dentate nuclei (DNs) are key structures in the anatomical circuits linking the cerebellum to the extracerebellum. Previous resting-state functional connectivity (RsFc) analyses reported DN abnormalities in high-functioning ASD (HF-ASD). This study examined the RsFc of the DN in young adults with HF-ASD compared with healthy controls (HCs) with the aim to expand upon previous findings of DNs in a dataset using advanced, imaging acquisition methods that optimize spatiotemporal resolution and statistical power. Additional seed-to-voxel analyses were carried out using motor and nonmotor DN coordinates reported in previous studies as seeds. We report abnormal dentato-cerebral and dentato-cerebellar functional connectivity in ASD. Our results expand and, in part, replicate previous descriptions of DN RsFc abnormalities in this disorder and reveal correlations between DN-cerebral RsFc and ASD symptom severity.
Introduction
Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by deficits in social–emotional functioning along with restricted repetitive behaviors (APA, 2013). Although the associated psychopathologies as well as the combination and severity of symptoms are heterogeneous in ASD populations, cerebellar abnormalities are consistently observed in neuroimaging research in ASD (D'Mello and Stoodley, 2015). Observed cerebellar/cerebro-cerebellar circuit abnormalities in ASD include reduced integrity of white matter (WM) tracts linking the cerebellum to extracerebellar structures (Brito et al., 2009; Groen et al., 2011; Hanaie et al., 2013; Jeong et al., 2012; Shukla et al., 2010), abnormal gray matter volume in the cerebellar cortex (D'Mello et al., 2015; Rojas et al., 2006), disrupted resting-state functional connectivity (RsFc) between regions within the cerebellum and from the cerebellum to cerebrum (Arnold Anteraper et al., 2018; Khan et al., 2015; Noonan et al., 2009), and disruptions in lateralization of both function and structure of cerebellar and cerebral cortical regions (Dawson et al., 1982; Escalante-Mead et al., 2003).
The dentate nuclei (DNs), the largest of the four pairs of cerebellar nuclei, are highly convoluted clusters of neurons embedded in the WM of the cerebellum (Sultan et al., 2010). The DNs play a role in cognitive, affective, and motor domains of behavior and are part of anatomical circuits linking the cerebellar cortex, thalamus, cerebral cortex, and basal ganglia (Alahmadi et al., 2017; Bernard et al., 2014; Bostan et al., 2010; Dum and Strick, 2003; Habas, 2010; Hoshi et al., 2005; Kuper et al., 2011). Tract-tracing studies demonstrate DN anatomical connectivity to motor cortical areas (BA 4,6) and nonmotor cognitive areas such as medial, dorsolateral, and orbital prefrontal cortices (Dum and Strick, 2003). The cerebellum's extended developmental trajectory makes it susceptible to dysfunction arising from genetic and epigenetic factors leading to potential deficits in neuroplasticity, sensorimotor processing, and multisensory integration (Sathyanesan et al., 2019). Synaptic and morphological defects of Purkinje cells (PCs) are potentially a key feature of developmental disorders with cerebellar dysfunction. A decrease in the number of PCs in autism, especially in Crus II in the posterior inferior hemisphere, which project to the dentate, has been reported before (Skefos et al., 2014). Previous studies have also reported dysregulation of GABA activity and decreased parvalbumin in PCs in cerebellar Crus II (Soghomonian et al., 2017; Yip et al., 2007).
The cerebellum is involved in regulation and modulation of affective and cognitive processes, in addition to motor processes (Guell et al., 2018b; Kelly and Strick, 2003; Middleton and Strick, 1994; Schmahmann and Sherman, 1998; Schmahmann, 1996; Stoodley and Schmahmann, 2009; Stoodley et al., 2012). There are several hypotheses regarding the specific role of the cerebellum in nonmotor and motor processes, including error-driven learning, prediction, timing of events, sequencing, and generation of internal models (Guell et al., 2018a). Importantly, the dorsal and ventral aspects of the DN are functionally distinct. The dorsal DN contributes to motor processes, while the ventral DN contributes to nonmotor processes (Alahmadi et al., 2017; Bernard et al., 2014; Dum and Strick, 2003). Diffusion tensor imaging studies have confirmed this functional topography of the DN, with connectivity between the dorsal DN and motor aspects of the cerebellum (lobules IV, V, and VI) and between the ventral DN and nonmotor aspects of the cerebellum (Crus I/II) (Steele et al., 2017).
Within the framework of control theory, which uses dynamical systems modeling to predict and design the response of systems to input, the brain has an internal model of the world that predicts what inputs it should be receiving. The cerebellum receives inputs from motor and nonmotor regions of the brain and has the machinery to attempt to reduce prediction error between this model and the incoming physiological signals by either updating the model or by taking action (Ramnani, 2014). In light of the histological homogeneity, it has been postulated that the cerebellum may play an analogous role in both motor and nonmotor functions regulating the speed, appropriateness, and timing of motor, cognitive, and affective processes (Schmahmann and Sherman, 1998). In contrast to the cerebral cortex where variation in cytoarchitecture largely coincides with variation in function (Brodmann, 2006), the functional variations across the cerebellar cortex are defined by its anatomical connections to extracerebellar structures (Ito, 1993; Schmahmann, 1991) and manifest as functional territories (FTs), as revealed by task-based and functional connectivity studies (Diedrichsen et al., 2019). Motor regions of the cerebellum form reciprocal circuits with somatomotor regions of the cerebral cortex, while nonmotor regions of the cerebellum interact with cognitive and affective regions of the cerebral cortex (Kelly and Strick, 2003). Previous work using a combination of functional magnetic resonance imaging (fMRI), positron emission tomography (PET), viral tracing, and animal models has characterized the circuitry underlying these interactions: information from each cerebral cortical hemisphere is directed to the ipsilateral pons; information from the pons is directed to the contralateral cerebellar cortex through the middle cerebellar peduncles; PC efferents in the cerebellar cortex project to the ipsilateral DNs; and information leaves the DN through the superior peduncles to the contralateral thalamus, which relays information back to the original region of the cerebral cortex (Buckner, 2013).
A large number of studies have reported cerebellar-cortical functional connectivity differences in ASD (e.g., Arnold Anteraper et al., 2018), but very few have focused on cerebellar nucleus abnormalities. Olivito and colleagues (2017) reported abnormal functional connectivity between the DN and cerebral cortical regions involved in the theory of mind processing. Hanaie and colleagues (2018) performed whole-brain, seed-based RsFc analyses using the bilateral DN and subregions of the cerebellar cortex (20 lobules and 8 vermis regions) as regions of interest in two independent datasets, and they reported reduced right DN to cerebral cortex connectivity in the ASD group. Based on the possibility that cerebellar nuclei and cerebral cortical contributions to neural function are fundamentally distinct (Raymond and Medina, 2018), it is relevant to further investigate DN functional connectivity differences in ASD. In this study, we aim to expand upon previous findings of DNs in a dataset using advanced imaging acquisition methods that optimize spatiotemporal resolution and statistical power. A male-only sample was chosen in line with recent reports suggesting that cortico-cerebellar functional connectivity patterns might be distinct in males, as opposed to female ASD patients (Smith et al., 2019).
Methods
Study participants
Our study and analysis included 20 ASD participants and 20 healthy controls (HCs) (all males), mean ages = 21.25 ± 3.73 and 24.15 ± 3.88 years, respectively (see Table 1 for demographics). MRI and behavioral data were obtained from the Autism Brain Imaging Data Exchange (ABIDE) dataset provided by Michal Assaf, MD (Olin Neuropsychiatry Research Center, Institute of Living, Hartford Hospital and Yale School of Medicine, Department of Psychiatry) (Di Martino et al., 2014). Detailed information on phenotypic assessments and scan procedures is available at
Demographics
Values are expressed as n (%) or mean ± standard deviation.
ASD, autism spectrum disorder; BOLD, blood-oxygen-level-dependent; HCs, healthy controls; IQ, intelligence quotient; ADOS-G, Autism Diagnostic Observation Schedule–Generic; n.s., not significant.
Data acquisition
MRI resting-state and structural data provided by the ABIDE dataset were acquired as follows. Resting-state echo-planar images (EPI) were collected on 3T Siemens Skyra with simultaneous multislice imaging (multiband factor = 8), repetition time (TR) = 475 msec, echo time (TE) = 30 msec, flip angle (FA) = 60°, and with 3-mm isotropic voxels, 947 volumes with whole-brain coverage. T1-weighted structural images were collected using TR/TE/inversion time/FA: 2200 msec/2.88 msec/794 msec/13° and 0.8-mm isotropic voxels.
Seed selection
Seed-based RsFc analysis was carried out using left and right dentate seeds shown in Figure 1A (2-mm isotropic dentate atlas in the Montreal Neurological Institute (MNI) space provided by

Data analysis
Before carrying out the RsFc analysis, EPI data were preprocessed in SPM12 (realignment with respect to the first volume, normalization to MNI space with respect to the EPI template, and spatial smoothing with a 6-mm kernel [4-mm kernel for motor and nonmotor FTs]) (Wellcome Department of Imaging Neuroscience, London, United Kingdom;
Within- and between-group results were thresholded using a whole-brain height threshold of p < 0.001 and false discovery rate (FDR)-corrected cluster threshold of p < 0.05. To further interpret the functional significance of our results, cerebellar clusters were plotted in a gradient space of cerebellar functional neuroanatomy derived from 1003 Human Connectome Project participants [see Guell et al. (2018c)] using our in-house developed software, LittleBrain (Guell et al., 2019b). The SUIT toolbox was used to visualize cerebellar results using cerebellar flat maps (Diedrichsen and Zotow, 2015). For the additional exploratory analysis of unique effect [comparison of nonmotor vs. motor DN seeds, Bernard et al. (2014)], within- and between-group results were thresholded using a whole-brain height threshold of p < 0.005 and FDR-corrected cluster threshold of p < 0.05.
Results
Between-group contrast of DN functional connectivity
From the right DN seed, functional connectivity in the ASD group compared with HCs was reduced with ipsilateral supramarginal gyrus (SMG) and contralateral cerebellar lobules VI, Crus I, Crus II, VIIB, and VIII (Fig. 2A, B).

There were no statistically significant between-group differences in functional connectivity from the left DN seed.
Inspection of within-group maps of connectivity from right DNs in the HC group (Fig. 2E) and ASD group (Fig. 2F) revealed, as expected from between-group findings shown in Figure 2A and B, stronger connectivity in the HC group in the ipsilateral cerebral cortex and contralateral cerebellum when compared with the ASD within-group DN connectivity maps (including absent positive functional connectivity, as determined by our thresholds, to the right SMG and some aspects of left cerebellar cortex in ASD). There was increased connectivity to the posterior cingulate cortex and medial prefrontal cortex in ASD maps when compared with HC maps (Fig. 2E, F), but these differences that were observable in within-group maps did not survive statistical testing in our group contrast analysis (Fig. 2A, B). Detailed cluster information for between-group results is presented in Table 2 as well as Figure 2G.
Results from Second-Level Seed-to-Voxel RsFc Analysis for HC Versus ASD Contrast for Right DN (Height Threshold = p < 0.001 Two-Sided; Cluster Threshold = p < 0.05 FDR Corrected)
FDR, false discovery rate; RsFc, resting-state functional connectivity; DN, dentate nucleus; MNI, Montreal Neurological Institute.
Inspection of within-group functional connectivity maps from the additional seed-to-voxel analysis of unique effect (nonmotor > motor DN seeds) in HCs (Fig. 3A) and ASD (Fig. 3B) revealed stronger connectivity in right Crus I/II in the HC group. Direct comparison (HC vs. ASD contrast) revealed increased connectivity to posterior cingulate and superior frontal cortices, associative visual cortex, fusiform gyri, and superior temporal regions (Fig. 4). Detailed cluster information for between-group results is presented in Table 3.

HC

Cerebral cortical results from second-level seed-to-voxel RsFc analysis for HC versus ASD contrast for the unique effect (nonmotor > motor DN seeds) (height threshold = p < 0.005; cluster threshold = p < 0.05 FDR corrected). Age was added as a regressor of no interest. Boxplots
Results from Second-Level Seed-to-Voxel RsFc Analysis for HC Versus ASD Contrast for the Unique Effect (Nonmotor > Motor DN Seeds) (Height Threshold = p < 0.005; Cluster Threshold = p < 0.05 FDR Corrected)
Denotes regions (clusters e and f) that are significantly correlated with total ADOS scores, see Figure 5.
Within-group ASD behavioral correlations with DN functional connectivity
Within-group ASD behavioral correlations with total ADOS scores were carried out on all the clusters that survived significance testing for the between-group contrasts. Results are shown in Figure 5.

Group differences in dentate connectivity for the unique effect (nonmotor > motor DN) correlate with total Autism Diagnostic Observation Schedule scores in the posterior cingulate cortex
Discussion
In the present study, we examined whole-brain RsFc of the DN in ASD using high spatial and temporal fMRI resolution as well as QSM-based DN seeds. Our findings provide evidence of abnormal intrinsic functional connectivity of the DN in young adults with high-functioning ASD (HF-ASD). Specifically, we report decreased connectivity with SMG and multiple cerebellar cortical territories. Our findings are consistent with a large body of evidence demonstrating cerebellar functional connectivity abnormalities in ASD (Arnold Anteraper et al., 2018; Khan et al., 2015; Verly et al., 2014) and extend previous findings of abnormal functional connectivity of the DN in this disorder (Olivito et al., 2017) in a more stringent statistical analysis using a dataset with higher spatial and temporal resolution and a refined seed selection method.
Recent studies indicate that cerebellar nuclei might play a relevant and functionally distinct role in the anatomical circuits linking the cerebellar cortex with extracerebellar regions (Raymond and Medina, 2018). If the DN performs a distinct computation when compared with the cerebellar cortex, a comprehensive analysis of cerebellar functional connectivity in ASD should include the DN. This hypothesis, in combination with previous evidence of abnormal RsFc of the DN in ASD (Olivito et al., 2017), highlights the relevance of investigating the functional connectivity of DN in ASD.
Abnormal dentato-cerebral connectivity in ASD
Cerebral-cortical functional connectivity abnormalities were observed in a task-positive region, specifically in the right SMG (Fig. 2A). Cerebellar-cortical functional connectivity abnormalities were situated in both task-negative (default mode) and task-positive (frontoparietal, ventral attention, and dorsal attention network) regions. The DN receives input from many different aspects of the cerebellar cortex, clinical phenomenology in ASD includes disruption of numerous aspects of cognitive and affective processing, and it is thus reasonable to observe abnormal connectivity in both task-negative and task-positive regions in our analysis. DN connectivity abnormalities to SMG have been reported in previous investigations of DN functional connecitivty in ASD (Olivito et al., 2017). Previous RsFc studies have shown that the DN has strong functional coherence with SMG (Allen et al., 2005). SMG has been implied in human action observation/imitation and is noted to be functionally abnormal in fMRI investigations in ASD (Salmi et al., 2013). Functional hypoconnectivity in dorsal and ventral attention networks in adults with ASD has also been reported before (Farrant and Uddin, 2016). Subregions of the temporoparietal junction (TPJ), such as the SMG, are part of the somatosensory association cortex, have functional associations with cerebellar cortices (specifically with left Crus II of the cerebellum) (Igelstrom et al., 2017), and are also implicated in identification of gestures and postures of others as a part of the mirror neuron system (Reed and Caselli, 1994) that is affected in ASD. Furthermore, one transcranial magnetic stimulation study (Riva et al., 2016) determined causal involvement of the right SMG in emotional egocentricity biasing (Silani et al., 2008). The right TPJ is also consistently implicated in false belief tasks wherein subjects are asked to predict the behavior of someone who has received invalid information (Saxe and Wexler, 2005). Children with ASD show delayed development in performance on such tasks versus age-matched controls (Baron-Cohen, 1989).
Lack of anticorrelations between the default mode network (DMN) and right SMG has been demonstrated recently in two different adult cohorts of HF-ASD (Joshi et al., 2017). While our present analysis did not investigate connectivity between the DMN and right SMG, our between-group DN connectivity contrast revealed abnormalities in both the cerebellar DMN and right SMG. Abnormal connectivity of the DMN and SMG with DN resonates with our previous description of dysconnectivity between these two networks in ASD (Joshi et al., 2017). In this way, our results are coherent with previous studies, suggesting that disruptions in task-positive/task-negative interactions are a core feature of ASD (Joshi et al., 2017; Kennedy and Courchesne, 2008; Yerys et al., 2015).
Abnormal dentato-cerebellar connectivity in ASD
The right DN was abnormally connected with numerous distinct FTs of the cerebellum in the ASD group. Left cerebellar functional abnormalities, specifically in each of the three areas of cerebellar nonmotor representation, have been reported recently using a high-temporal resolution, unbiased, data-driven fMRI analysis (Arnold Anteraper et al., 2018).
Cerebellar regions of abnormal RsFc with the right DN spanned through multiple distinct FTs of the cerebellar cortex, including ventral attention, dorsal attention, frontoparietal, and DMNs, as well as some aspects of the somatomotor network (Fig. 2C). Visualizing our results in a cerebellar functional gradient space as developed by Guell and colleagues (2018c) confirmed that our results were not restricted to one single functional domain of the cerebellum, but rather spanned across multiple territories in a continuous motor-to-nonmotor distribution (as indicated by the wide spread of data points along gradients 1 and 2 in Fig. 2D). This organization is coherent with the anatomical reality that the DN receives input from many different aspects of the cerebellar cortex and is consistent with the wide diversity of behavioral abnormalities observed in ASD (ranging from sensory to motor to multiple domains of cognitive and affective processing).
Abnormal connectivity in right, but not left, DN
Our analysis revealed abnormal functional connectivity in right, but not left, DN. This observation is in contrast to a previous study reporting left, but not right, DN functional dysconnectivity in ASD (Olivito et al., 2017). However, a voxel-based morphometry analysis by the same research group revealed structural differences in the regional cerebellar gray matter volume (GMV), specifically in right Crus II (Olivito et al., 2018). More recently, Hanaie and colleagues (2018) have reported reduced RsFc of the right DN in ASD. While additional studies with larger cohorts will be needed to definitively characterize the predominance of left versus right DN abnormal connectivity in ASD, convergent evidence from animal and human ASD research indicates that the right cerebellum (and thus right DN) might play a more important role in the pathophysiology of ASD when compared with the left cerebellum. Specifically, previous studies in children with ASD report reduced cerebellar GMV in the right cerebellum (D'Mello et al., 2015). Reductions in right cerebellar GMV have been associated with core ASD symptomology (D'Mello et al., 2015). The importance of the right cerebellum compared with the left has also been explored in animal studies of ASD. Stoodley and colleagues (2017) reported that neuromodulation of the right, but not left, cerebellum was sufficient to both cause and rescue social communication deficits in a mouse model of ASD. Although it is not clear why this lateralization exists, it may be the case that the right cerebellum is more specialized for socio-communicative functions through its contralateral connectivity with left cerebral regions implicated in language. Deficits in socio-communicative skills are core to the ASD diagnosis.
Of note, no significant differences were observed when directly comparing seed-to-voxel functional connectivity between the two hemispheres. In this way, while our analyses revealed differences in the right, but not left, DN, future studies with higher statistical power will be needed to definitively establish lateralization differences in DN abnormalities in ASD.
Unique effect (nonmotor vs. motor DNs)
Additional analyses exploring the unique effect [comparison of nonmotor vs. motor DN seeds, Bernard et al. (2014)] revealed significant differences in both task-positive and task-negative networks. ASD participants showed decreased strengths in functional connectivity in the posterior cingulate and superior frontal cortices (Fig. 4, clusters e and f), both nodes of the DMN. DMN is one of the most consistently abnormal networks in ASD studies [for review, see Padmanabhan et al. (2017)]. Our findings of DN-DMN connectivity abnormalities provide further support for a central role of DMN in ASD. DN connectivity abnormalities were also observed in task-positive regions, specifically in the associative visual cortex (Fig. 4, cluster a), fusiform gyri (clusters b and g), and superior temporal regions (clusters c, d, and h). These regions are associated with social processing, and poor functional segregation of these regions with DMN has been previously reported (Joshi et al., 2017). Hypoactivation in fusiform gyri to emotional face processing has been reported previously (Pelphrey, 2017). Connectivity between left Crus I/II and bilateral, posterior, superior temporal regions is associated with social interaction (Jack and Pelphrey, 2015), which is one of the core deficits of ASD. Very recent reports suggest that network-based (as opposed to location-based) characterization of fMRI abnormalities might crucially improve the consistency of findings across neuroimaging studies of specific neurological and psychiatric disorders (Darby et al., 2018). DN receives input from many different aspects of the cerebellar cortex, clinical phenomenology in ASD includes disruption of numerous aspects of cognitive and affective processing, and it is thus reasonable to observe abnormal connectivity in both task-negative (DMN) and task-positive regions in our analysis.
Behavioral correlations
This is the first study to establish a correlation between ASD symptom severity and DN functional connectivity. Brain regions emerging from ADOS correlations, posterior cingulate cortex and superior frontal gyrus, align with clinically relevant features of ASD. These regions (part of the DMN) are relevant for internally oriented thought and conceiving the perspective of others, which are brain functions that are abnormal in ASD. Importantly, these brain regions that are abnormally connected to DNs in ASD are also the brain regions that are more strongly correlated with symptom severity when analyzing connectivity patterns to the DN. The correspondence of between-group differences and within-group ADOS correlations observed here provides further evidence that the structures identified in our analysis are relevant in the pathophysiology of ASD and hone in on the relevance of studying the DN in ASD.
Limitations and future studies
The findings of the present study invite future investigations to continue exploring the role of the DN in ASD. In this study, the entire DN (rather that subsections) was used as the seed for RsFc analysis. Future studies may be able to obtain a more nuanced understanding of the role of the DN in ASD by conducting RsFc analysis with smaller FTs within the DN (Guell et al., 2019a). However, given the resolution limitations of current fMRI methods, this may be difficult without higher field strengths or denser array coils. Behavioral correlations in studies with modest sample sizes are inherently limited (Button et al., 2013). Because of the clinical heterogeneity in autism, studies with larger sample sizes will be needed to definitively establish that DN functional connectivity abnormalities correlate with symptom severity in ASD. This limitation notwithstanding, our study is the first to identify a relationship between ASD symptom severity and DN functional connectivity and thus invites future larger investigations to continue exploring not only differences in DN connectivity between ASD patients and controls but also the relationship between DN fMRI signals and clinical severity within ASD cohorts. As the unique role of the DN in cerebellar processing is only beginning to be understood (Raymond and Medina, 2018), interesting questions about its contribution to ASD remain open. Future studies may examine whether DN abnormalities are different from cerebellar cortical abnormalities and whether abnormal DN physiology makes unique contributions to ASD phenotypes.
Footnotes
Acknowledgments
X.G. was supported by the MGH Tosteson and Fund for Medical Discovery Postdoctoral Fellowship Award. The authors would like to thank the contributors to ABIDE.
Author Disclosure Statement
No competing financial interests exist.
Funding Information
This work is funded, in part, by the Athinoula A. Martinos Imaging Center, MIT, the Alan and Lorraine Bressler Clinical and Research Program for Autism Spectrum Disorder, and the MGH Pediatric Psychopharmacology Council Fund.
