Abstract
In this study, we investigated the association of GSTP1, GSTM1, and GSTP1 genetic variants with renal cell carcinoma (RCC) among North Indian patients. The difference in frequency of the GSTT1 null genotype between cases and control subjects was statistically significant (active ver. null, odds ratio [OR]=0.368; confidence intervals [CI] 95%=0.243–0.557, p=0.001). The differences in the frequency of GSTP1 genotypes were statistically significant (AA ver. AG/GG, OR=1.879; CI 95%=0.355–0.797, p=0.002). Higher allelic frequency of the GSTP1 G allele was associated with RCC cases (G ver. A allele, OR=1.534; 95% CI=1.159–2.030, p=0.003). The gene–gene interaction in terms of three-way combination of GSTM1 null, GSTT1 null, and GSTP1 (AG/GG) resulted in 4.5-fold increase in RCC risk (OR=4.452; 95% CI=2.220–9.294). Similarly, our study revealed that GST polymorphism might be a vital determinant of advancement to higher pathological stages and histological grades of RCC. Our findings suggest that genetic variability in members of the GST gene family may be associated with an increased susceptibility to RCC and its progression.
Introduction
The glutathione-S-transferase pi gene (GSTP1) is a polymorphic gene encoding active, functionally different GSTP1 variant proteins that are thought to function in xenobiotic metabolism and play a role in susceptibility to cancers. GSTP1 plays a pivotal role in the detoxification of activated forms of polycyclic aromatic hydrocarbon compounds (Hayes and Pulford, 1995). A single nucleotide polymorphism in the GSTP1 gene causes substitution of isoleucine to valine at amino acid codon 105 (Ile105Val) (Zimniak et al., 1994; Hu et al., 1997). This allele variant appears to reduce GSTP1 activity, which could lead to genetic damage and increased cancer risk (Harries et al., 1997). The GSTM1 gene encodes for cytoplasmic glutathione transferase (μ-class). The genes encoding the μ-class (GSTM1) of enzymes are prearranged in a gene cluster on chromosome 1p13.3. These genes are well known for being highly polymorphic in nature. The μ-class enzymes play an important role in the detoxification of electrophilic compounds, polycyclic aromatic hydrocarbons, chemotherapeutic drugs, environmental carcinogens, and reactive oxygen species by conjugation with glutathione (Rebbeck, 1997). GSTM1 enzymes have catalytic activity toward phospholipids, hydroperoxide, substantiating the fact that GSTs may prevent DNA damage from lipid peroxides formed endogenously because of oxidative stress (Hurst et al., 1998; Thier et al., 1998). GSTT1 is located at 22q11.2, and like the GSTM1 deletion polymorphism, produced by a homologous recombination event involving left and right 403 bp repeats resulting in a ∼54-kb deletion containing the entire GSTT1 gene (Parl, 2005). The GSTT1 gene encodes for a class θ-GST that also catalyzes the conjugation of reduced glutathione to electrophilic centers. Substrates of θ-GST include industrial chemicals such as methyl chloride, methyl bromide, dichloromethane, ethylene oxide, and diepoxybutane, a reactive metabolite of 1,3-butadiene (To-Figueras et al., 1997).
Genetic variations can modify an individual's vulnerability to carcinogens and toxins and are expected to affect cancer risk, because of diminished protection against attack of reactive electrophiles on DNA. There are a small number of studies that have considered whether GSTs have a propensity to cause RCC. However, even that paltry number of studies had conflicting reports concerning the role of GSTs in renal carcinogenesis (Brüning et al., 1997; Longuemaux et al., 1999; Sweeney et al., 2003). In addition, a possible role of GST gene polymorphisms in modifying the risk to RCC among the Indian population was not studied. Therefore, to the best of our knowledge, this study is the first to investigate role of GST polymorphisms and their interactions in modifying risk of RCC and its possible correlation with pathological stage and Fuhrman grade in a North Indian population.
Materials and Methods
Subjects
The present case–control study was carried out from December 2008 to February 2011. In this study, a total of 196 (138 males and 58 females) newly diagnosed RCC patients from the North Indian population (from the states of Delhi, Uttar Pradesh, Punjab, Haryana, Rajasthan, and Uttaranchal) registered in the Department of Urology, All India Institute of Medical Sciences (AIIMS), New Delhi, India, were recruited. Patients were recruited after radiologic and histologic diagnosis of RCC. The control group included 250 healthy volunteers (172 men and 78 women), chosen at the same time that were free of any chronic diseases, having no history of any cancer and living in the same geographical area. They were matched with cases by age and sex. Smoking and hypertension were also evaluated during the recruitment of cases and control subjects by means of a patient case record form and a questionnaire respectively. Histopathologic staging and grading was done after nephrectomy and followed the tumor-node-metastasis (TNM) classification of the American Joint Committee on Cancer 6th edition (Greene, 2002). All patients received a patient information sheet and signed a consent form, approved by the Institutional Committee on Human Ethics (ICHE proposal no. P-18/1.09.08). Likewise, control subjects received a volunteer information sheet and signed consent. About 5 mL of peripheral blood was collected from both the patients and healthy volunteers for DNA extraction and then processed for genotyping. To validate the findings of multiplex PCR and RFLP, the analysis of all mutant homozygous samples and 20% of heterozygotes was duplicated and confirmed by direct sequencing with 100% concordance.
DNA isolation
Genomic DNA samples were obtained from blood lymphocytes using a genomic DNA extraction kit (Bioserve biotechnologies Pvt. Ltd.). Isolated DNA was resuspended in Tris EDTA buffer (pH 8.0) and stored at ±20°C until use.
GSTP1 genotyping
The GSTP1 exon 5 Ile105Val polymorphisms were determined by PCR and restriction fragment length polymorphism according to the method of Harris et al. with some modifications (Harries et al., 1997). The PCR amplification was carried out with, 50 ng DNA in 10 mM Tris–HCl, pH 8.3, 50 mM KCl, 1.5 mM MgCl2, 0.3 mM deoxyribonucleotide triphosphates (Fermentas life sciences, Inc.), 200 ng of each primer, and 1.0 U of Taq polymerase (Fermentas life sciences, Inc) in a total volume of 25 μL. Amplification was performed with an initial denaturation step at 95°C for 12 min, followed by 35 cycles at 94°C for 30 s, 54°C for 30 s, and 72°C for 45 s and a final extension at 72°C for 10 min.
The amplification product (20 μL) was digested with 5U of BsmAI (New England Biolabs) in 50 mM NaCl, 10 mM Tris–HCl, 10 mM MgCl2 and 1 mM dithiothreitol, and then incubated at 55°C for 16 h. The fragments were analyzed on a 3.5% agarose gel with ethidium bromide (0.5 μg/mL). When a BsmAI restriction site was present, the 176 bp fragment was digested into two 91 and 85 bp fragments. Electrophoresis of the digested PCR products showed individuals homozygous (Ile/Ile) for the GSTP1 BsmAI polymorphism as one band of 176 bp. Heterozygotes (Ile/Val) for the polymorphism showed three bands of 176, 91, and 85 bp. Homozygotes (Val/Val) showed two bands of 91 and 85 bp.
GSTM1 and GSTT1 genotyping
GSTM1 and GSTT1 genotyping for gene deletions was carried out by Multiplex PCR as described by Lin et al. (1998) with minor modifications. DNA samples were amplified with the primers as stated by Lin et al., for GSTM1, which produced a 219 bp product; 5′ TCACCGGATCATGGCCAGCA 3′ and 5′ TTCCTTACTGGTCCTCACATCTC 3′ (Clonitec) for GSTT1, which produced a 459 bp product. Amplification of beta actin gene with the primers 5′ GCCCTCTGCTAACAAGTCCTAC 3′ (Clonitec) and 5′ GCCCTAAAAAGAAAATCCCCAATC 3′ (Clonitec) was used as an internal control and produced a 350 bp product. PCR was performed in a final volume of 25 μL, consisting of DNA (0.1 μg), dNTP (0.2 mM each) (Fermentas life sciences, Inc.), MgCl2 (1.5 mM), each primer (1.0, 0.3, and 0.2 μM for GSTM1, GSTT1, and beta actin, respectively), Taq polymerase (1.25 U) (Fermentas life sciences, Inc.), reaction buffer, and 2% dimethylsulphoxide. Amplification was performed with an initial denaturation at 95°C for 12 min, followed by 35 cycles of amplification, which was performed at 94°C for 45 s, 62°C for 45 s, and 72°C for 45 s and a final extension at 72°C for 10 min, using a Biorad minithermocylcler. The amplified product was observed in an ethidium bromide-stained 1.5% agarose gel. If the study subject is null for the gene, no PCR product is present, but the beta actin gene fragment acts as a positive PCR control. Previously sequenced samples were used as negative and positive controls.
Statistical analysis
Differences in genotype of various isoforms of GST genes between the RCC cases and the control subjects were studied. The chi-square test was performed to verify whether genotypic distribution followed the Hardy–Weinberg law of equilibrium. The associations between the genotypes and the clinicopathologic characteristics at the time of diagnosis of the RCC patients were also assessed for statistical significance using the chi-square test (Fisher's exact test when expected frequencies were small) and chi-square test for trend. Odds ratio (OR) at 95% confidence intervals (95% CI) and p-values were computed by binary logistic regression, and all results were adjusted for age, sex, hypertension, smoking, and body mass index (BMI). The independent sample student t-test was applied to check association between cases and control subjects. p-values < 0.05 were considered statistically significant. All analyses were performed using the statistical package SPSS version 16 (SPSS).
Results
Characteristics associated with increased RCC risk included smoking, high BMI, and hypertension as mentioned in Table 1. Demographic characteristics and exposure histories of cases and control subjects were similar. We examined 196 cases and 250 control subjects for GSTP1, GSTT1, and GSTM1 genotypes. The numbers of patient distribution among different histopathologic subtype of RCC were: Clear RCC–176, Papillary RCC–14, chromophobe RCC–4, and unclassified RCC–2. We performed Pearson's chi-square test of our control population for GSTP1 genotypic distribution. GSTP1 genotypic distribution was according to Hardy–Weinberg equilibrium, with p-value of 0.993.
p-value (two sided) Pearson Chi-square test.
p-value of t-test for independent samples.
OR, crude odds ratio calculated at 95% confidence interval (95% CI); BMI, body mass index.
According to Table 1, the mean age was matched with 54.21±0.967 and 54.01±0.916 years, in cases and control subjects, respectively, with a p-value=0.883. Among the cases 70 (35.7%) were in stage I, 60 (30.6%) in stage II, and 66 (33.7%) were in stage III+IV, whereas among the cases 42 (21.4%), 122 (33.7%), and 130 (16.3%) were in grades I, II, and III+IV, respectively. The sex ratio was similar in cases and control (p=0.714) (Table 1). Hypertension was present in 66 (33.9%) and 130 (16.0%) of cases and control, respectively, which was significant (p<0.001) with an OR 2.665 (95% CI, 1.700–4.178). Smoking was associated more strongly (p<0.001) with cases 54 (27.6%) than control subjects 142 (12.8%) with an OR of 2.591 (95% CI, 1.594–4.210). Table 1 shows significant difference (p=0.008) in mean BMI, which was 23.67±0.164 and 22.76±0.126 in cases and control subjects, respectively. The high BMI group has higher risk to RCC with an OR=2.075 (95% CI, 1.298–3.316) than low BMI group.
The GSTT1 active genotype was present in 71 (36.2%) and 144 (57.6%) of cases and control subjects, respectively, the difference in their frequency was statistically significant (GSTT1 active ver. null, OR=0.418, 95% CI; 0.285–0.612, p=0.001) as shown in Table 2. Multivariate logistic regression analysis was performed to adjust for age (continuous variable), sex, hypertension, smoking, and BMI (continuous variable). After adjusting for the said parameters, higher frequency of GSTT1 null genotype was strongly associated with cases (GSTT1 active ver. null, OR=0.368; 95% CI, 0.243–0.614; p=0.001). GSTM1 active genotype was present in 94 (48.0%) and 134 (53.6%) of cases and control subjects, respectively, which was not statistically significant (GSTM1 active ver. null, OR=0.798, 95% CI; 0.549–1.160, p=0.253,). Even after adjusting for age (continuous variable), sex, hypertension, smoking, and BMI (continuous variable) in multivariate logistic regression model, the GSTM1 null genotype did not influence overall RCC risk (GSTM1 active ver. null, OR=0.867, 95% CI; 0.582–1.291, p=0.482). Table 2 reveals that GSTP1 GG was significant at approximately twofold higher risk for RCC (OR=2.197, 95% CI; 1.153–4.185, p=0.011) than the GSTP1 AA genotype. Similarly, the GSTP1 AG genotype was at a significantly higher risk for RCC (OR=1.705, 95% CI; 0.973–3.807, p=0.008) than the GSTP1 AA genotype. After adjusting for age (continuous variable), sex, hypertension, smoking, and BMI (continuous variable) both the AG genotype (AG ver. AA, OR=1.924, 95% CI; 0.973–3.807, p=0.060) and GG genotype (GG ver. AA, OR=1.024, 95% CI; 0.519–2.021 p=0.945) did not differ among cases and control subjects significantly. Moreover, univariate analysis revealed that AG and GG combined had a higher risk for RCC than AA genotype (OR=1.789, 95% CI; 1.220–2.622, p=0.002). Table 2 further shows that G allele frequency (38.52%) was higher in RCC cases than control subjects (G allele ver. A allele, OR=1.534, 95% CI; 1.159–2.030, p=0.003) than. Table 3 shows numbers of cases and control subjects according to combined genotypes for GSTT1, GSTM1, and GSTP1. The cumulative effects of combined genotypes were calculated using OR with GSTT1 present, GSTM1 present, and GSTP1 AA as the reference category. Although CIs were large due to the small number of subjects in some categories, there was increased risk associated with GSTT1 null genotype in combination with either of the GSTP1 and GSTM1 genotypes. There was highest risk among the group with GSTM1 null, GSTT1 null and GSTP1 AG or GG genotype with an OR=4.452 (CI 95%, 2.220–9.294).
p-value (two sided) Fisher's exact test, ORa: Crude odds ratio calculated at 95% confidence interval (95% CI) of unadjusted multivariate model.
p-value value (two sided) Fisher's exact test, ORb: Crude odds ratio calculated at 95% confidence interval (95% CI) for adjusted model for sex (categorical), hypertension (categorical), smoking (categorical) and BMI (continuous).
OR, crude odds ratio at 95% confidence interval (95% CI).
Interaction among the genotypes was tested in the logistic regression model adjusted for age (continuous variable), sex, smoking, hypertension, and BMI (continuous variable). There was significant statistical significance of interaction between GSTT1 and GSTM1 (active ver. null, OR=0.735; CI 95% CI; 0.616–0.876, p=0.001), GSTT1 active and GSTP1 AA (GSTT1 active, GSTP1 AA ver. GSTT1 null, GSTP1 AG/GG, OR=0.638; 95% CI; 0.535–0.762, p<0.001), between combined GSTT1 active, GSTM1 active, and GSTP1 AG or GG genotypes (OR=0.815, 95% CI; 0.744–0.893, p<0.001).
We also compared the various risk factors with RCC Fuhrman nuclear grade and histopathological stage of RCC. Among the various risk factors, presence of active GSTT1 genotype (51.1%, 27.7%, and 21.3% for stage I, II, and III+IV, respectively) was associated with decreasing stages of RCC (p trend=0.003). Similarly, the presence of active GSTM1 allele (51.1%, 30.9%, and 18.1% for stage I, II, and III+IV, respectively) was associated with decreasing stages of RCC (p trend<0.001) as shown in Table 4. The decrease in the frequency of GSTP1 AA genotype (52.1%, 35.2%, and 12.7% for stage I, II, and III+IV, respectively) was significantly associated with decreasing stage of RCC (p trend<0.001). Higher BMI was significantly associated with higher stages of RCC (Table 4).
Chi-square test for trend.
BMI, tertile- low, middle and high.
Table 5 reveals that the GSTT1 active genotype (31.0%, 64.8%, and 11.3% in Fuhrman's grade 1, 2, and 3+4, respectively) was significantly associated with increase in Fuhrman's grade (p trend=0.012). The decrease in GSTP1 AA genotype (33.8%, 53.5%, and 12.7% in Fuhrman's grade 1, 2, and 3+4, respectively) showed significant increase (p trend=0.012) with higher Fuhrman's grade. Hypertension was also significantly associated with higher nuclear grade (p trend=0.005). The patients with higher tertile of BMI showed a trend toward higher Fuhrman's grade (p trend=0.012).
Chi-square test for trend.
Discussion
Tobacco smoking, obesity, and hypertension are established risk factors for RCC and account for about half of the diagnosed cases in the United States (Sweeney et al., 2003; Lipworth et al., 2006). In this study we observed an increase in prevalence of RCC among individuals with hypertension, higher BMI and smoking habits as observed previously (Yuan et al., 1998; Shapiro et al., 1999; Bjørge et al., 2004). The exact reason for the association between obesity and RCC is not known, but investigators have hypothesized that it might be secondary to hormonal changes (increased levels of IGF or oestrogen), decreased immune function, or associated hypertension/diabetes mellitus in obese patients (Moyad, 2001). The frequencies of the GSTM1, GSTT1, and GSTP1 genotypes among control subjects in this study were comparable with previously reported study populations from India (Pandey et al., 2006; Sharma et al., 2006; Singh et al., 2008) and abroad (Harries et al., 1997; Ryberg et al., 1997; Lecomte et al., 2006). Our study showed an increased frequency of the GSTT1 null genotype in RCC cases compared to control subjects. Our findings of an increased incidence of GSTT1 null genotypes among RCC cases suggest that activity of the GSTT1 enzyme protects against development of RCC. The GSTP1 AA genotype was found to be associated with lower risk for RCC compared to GSTP1 AG or GG genotypes. Similarly, our study has shown individuals with the GSTP1 G allele had ∼1.5-fold increased risk compared with the A allele for RCC, which was very significant (p=0.003). In multivariate statistical analysis, age, sex, hypertension, smoking, and BMI-adjusted ORs for GSTT1 and GSTM1 genotypes were similar to crude ORs. The gene–gene interaction analysis showed a cumulative effect, with 4.5-fold increased risk to RCC among the individuals with a combination of GSTT1 null, GSTM1 null, and GSTP1 AG/GG genotype.
The results of our study and other reports suggest that polymorphic variations in the GSTs are associated with cancer susceptibility. It is assumed that the high inter-individual variability of carcinogen-metabolizing enzymes in human kidneys may be involved in the regulation of local levels of carcinogens and mutagens and may underlie inter-individual differences in cancer susceptibility. The plausible explanation of our results may be that renal cells have high metabolic rate and oxygen demand, leading to enhanced endogenous formation of reactive oxidants metabolites. Elevated levels of somatic mutations in kidney were found when compared with other organs (Martin et al., 1996). GST enzyme catalyze conjugation of glutathione with a broad range of substrates including lipid peroxides formed endogenously because of oxidative stress (Hayes and Pulford, 1995). This conjugation of foreign compounds with glutathione leads to the formation of less reactive products that are readily excreted. Association between the GSTT1 null genotype and an inefficient GSTP1 mutant (Ile/Val or Val/Val) and increased RCC risk within Indian RCC patients may be due to the weak protection against the endogenous reactive metabolites and PAHs present in the heavily polluted North Indian environment.
Our study is the first of its kind to report significant increase in risk to advanced RCC stages with GSTM1 null, GSTT1 null, and GSTP1 AG or GG genotype and advanced nuclear grade with GSTT1 null and GSTP1 AG or GG genotype. A study conducted recently in Spain also reported GSTT1 deletion but not GSTM1 deletion to be associated with advanced stages of RCC (Salinas-Sánchez et al., 2011). There was also trend of higher cancer stage and grade with higher BMI. This association may be attributed to compromised protection of less efficient variants of these GST genotypic isoforms of an individual from both environmental and endogenous reactive species. This compromised protection against various toxicants makes patients with RCC more susceptible of progression toward higher stages of cancer.
Several studies have suggested that the GSTM1 and GSTT1 null genotypes are risk factors for bladder, breast, oral, lung, head, and neck cancers (Schnakenberg et al., 2000; Mitrunen et al., 2001; Buch et al., 2002; Hung et al., 2003; Matthias et al., 2003; Burim et al., 2004). Polymorphisms of the GSTP1 gene were first reported by Board et al. (1989). They consisted of an A→G transition of nucleotide 313 in exon 5 involving the substitution of amino acids in the enzyme active site, Ile→Val. These allele variants appear to reduce GSTP1 activity, which could lead to genetic damage and increased cancer risk (Harries et al., 1997; Ryberg et al., 1997). Many studies have been carried out in India also, reporting the role of GST enzyme variants as a risk factor to different diseases. These studies suggested an increase in cancer risk associated with GSTT1 null genotype in oral cancer (Buch et al., 2002; Sharma et al., 2006; Chatterjee et al., 2009), prostate cancer (Mittal et al., 2004), cervical cancer (Singh et al., 2008), and leukemia (Bajpai et al., 2007), in line with the current findings. Similarly, the GSTP1 G allele was also seen to be associated with higher risk than the A allele in some of these studies, matching the results of this study. In most of the mentioned studies in India, the combination of GSTT1 null with GSTM1 null or GSTP1 AG/GG genotypes had an additive risk to cancer compared with each separately.
There have been conflicting reports from other regions t regarding the role of GSTT1, GSTM1, and GSTP1 in RCC. Case–control studies in France (Rodilla et al., 1998) and Spain (Salinas-Sánchez et al., 2011) reported no association between RCC and GSTT1 genotype. Another study in France, a hospital-based case control study, found no association between GSTM1 null, GSTT1 null, or GSTP1 polymorphisms and RCC risk (Longuemaux et al., 1999). The study by Sweeney et al. reported increased risk of RCC with GSTT1 null genotype and thus our results strongly support their claim (2003). On the contrary, in a study done in Germany and a recent study from Serbia, GSTT1 null genotypes were associated with reduced risk of RCC (Brüning et al., 1997; ori et al., 2010). Our results are contrary to Buzio et al. (2003) and Karami et al. (2008), where they reported an increased risk of RCC in participants occupationally exposed to pesticides with active GSTT1 genotype. These conflicting reports may be attributed to demographic variation among the different populations of the world. Another possible explanation of the discrepancy in results from the studies in Europe and India is that the environmental toxins to which people are exposed are different. In the Karami et al. study, pesticide exposure was an important risk factor, and it was only in the patients with documented exposure to pesticides that the active GSTT1 was associated with greater risk of RCC (Karami et al., 2008). As mentioned above, majority of case–control studies in the Indian population have shown strong association of genetic variations to the etiology of different type of cancers. Our results are the first one to reveal the role of polymorphism of GSTs among Indian RCC patients. Our study strongly supports the claim of earlier studies that active GSTT1 genotype and GSTP1 wildtype genotype are important as xenobiotic metabolizing enzymes are required for modulating the effect of exposure to toxicants. In renal cells, these enzymes have an important role in the detoxification of a variety of endogenous and environmental toxicants, thus protecting the DNA from damage that leads to genetic mutation and ultimately to RCC.
Conclusion
In summary, our data suggest that host metabolic variability within the GSTT1, GSTM1, and GSTP1 enzymes may significantly modify the risk of development of RCC and its advancement to higher cancer stages. Moreover, our results suggest that persons with smoking habits, hypertension, and high BMI are more susceptible to developing RCC. This study represents an initial effort to understand the role of genetic variation in xenobiotic metabolizing enzymes in the development of RCC among the Indian population. However, future studies must confirm our findings and define the underlying mechanisms on the molecular level. Studies with larger populations are warranted to replicate and extend this report.
Footnotes
Acknowledgments
The authors are thankful to the Indian Council of Medical Research (ICMR), New Delhi, India, for providing the funds to carry out this research. The authors thank Dr. Guresh Kumar, Department of Biostatistics, AIIMS, New Delhi, India, for providing assistance in the statistical analysis and interpretation of the data.
Disclosure Statement
The authors of this work do not have any conflict of interest with its presentation.
