Abstract
Shiga toxin–producing Escherichia coli (STEC) cause nonbloody (NBD) and bloody diarrhea (BD), and hemolytic uremic syndrome (HUS). Cattle have been described as their main reservoir. STEC O157:H7 is recognized as the predominant serotype in clinical infections, but much less is known about the dominant subtypes in humans and animals or their genetic relatedness. The aims of this study were to compare the STEC O157 subtypes found in sporadic human infections with those in the bovine reservoir using stx-genotyping, phage typing, and XbaI–pulsed-field gel electrophoresis (PFGE), and correlate the subtypes with the severity of clinical manifestations. The 280 STEC O157:H7 strains collected included in this study were isolated from HUS (n=122), BD (n=69), and NBD (n=30) cases, and healthy carriers (n=5), and from bovines (n=54) in the abattoirs. The stx-genotyping showed that stx 2/stx 2c(vh-a) was predominant in human (76.1%) and in bovine strains (55.5%), whereas the second more important genotype was stx 2 (20.8%) in human and stx 2c(vh-a) (16.7%) in cattle strains. In human strains, PT4 (37.6%), PT49 (24.3%), and PT2 (18.6%) were the most frequent PTs (80.5%). In bovine isolates, PT2 (26%), PT39 (16.7%), and PT4 and PT49 (11.1% each) were predominant. By XbaI-PFGE, all 280 strains yielded 148 patterns with 75% similarity, and 169 strains were grouped in 37 clusters. Identical PT-PFGE-stx profile combinations were detected in strains of both origins: PT4-AREXH01.0011-stx 2/stx 2c(vh-a) (12 humans and one bovine), PT4-AREXH01.0543-stx 2/stx 2c(vh-a) (one human and four bovines), PT2-AREXH01.0076-stx 2/stx 2c(vh-a) (one human and four bovines), PT49-AREXH01.0175-stx 2/stx 2c(vh-a) (seven humans and one bovine), and PT49-AREXH01.0022-stx 2/stx 2c(vh-a) (seven humans and one bovine). No correlation was found among the stx-genotypes, the phage type, and the clinical symptoms.
Introduction
S
Cattle have been recognized as the main reservoir of E. coli O157 worldwide (Gyles, 2007), including Argentina (Masana et al., 2010; Tanaro et al., 2010). The main vehicles for acquiring the infection are the consumption of contaminated food, especially undercooked ground beef, fresh produce, water, and direct contact with infected persons or animals (Caprioli et al., 2005).
Disease-associated human isolates of E. coli O157:H7 are characterized by the presence of specific sets of virulence genes, including those encoding Shiga toxins (stx 1, stx 2), intimin (eae), and hemolysin (ehxA) (Karmali, 2004).
In Argentina, post-enteric HUS is endemic, and approximately 400 new cases are reported annually, with an estimated rate of 12 cases per 100,000 children under 5 years old in 2009 (Rivas et al., 2011), and STEC O157 is the serogroup most commonly identified (Rivas et al., 2006).
There are a number of genotyping methods used for epidemiological studies of STEC O157, such as polymerase chain reaction (PCR) typing of several virulence factors, lineage-specific polimorphism assay using six markers (LSPA-6), restriction fragment length polymorphism (RFLP), pulsed-field gel electrophoresis (PFGE), and variable number tandem repeat analysis (MLVA) (Thomson-Carter, 2001; Yang et al., 2004; Hyytia-Trees et al., 2006). Some studies have reported differences in the genotype and virulence markers of STEC O157 strains from human patients and cattle (Eklund et al., 2002; Mora et al., 2004; Roldgaard et al., 2004; Barker et al., 2007; Nakamura et al., 2008; Aspán and Erikson, 2010; Lee et al., 2011; Kawano et al., 2012).
In this study, PFGE, phage typing, and stx-PCR-RFLP analysis of DNA fragments obtained by PCR were used to compare the STEC O157 subtypes found in sporadic human infections with those in the Argentine bovine reservoir, and to correlate the subtypes with the severity of clinical manifestations.
Methods
Bacterial strains
A total of 280 STEC O157 strains were included in this study. Between November 2006 and April 2008, 226 strains received at the National Reference Laboratory as part of the surveillance of HUS and diarrheal diseases were studied. The strains were isolated from HUS (n=122), BD (n=69), NBD (n=30) cases, and healthy carriers (n=5). For comparison purposes, 54 STEC O157 strains isolated from healthy beef cattle in a survey carried out in beef abattoirs during the same period (Masana et al., 2010) were included as representative of the Argentine bovine reservoir.
Phenotypic and genotypic characterization of isolates
Confirmation of isolates as E. coli was performed through biochemical tests (Ewing, 1986) and serotyping (Ørskov and Ørskov, 1984) using the somatic and flagellar antisera provided by the Instituto Nacional de Producción de Biológicos–ANLIS “Dr. Carlos G. Malbrán.”
Antimicrobial susceptibility to amikacin, ampicillin, ciprofloxacin, cloramphenicol, colistin, gentamicin, nalidixic acid, nitrofurantoin, streptomycin, tetracycline, and trimethoprim-sulfamethoxazole was established by standard methods (CLSI, 2011).
In all isolates, stx 1, stx 2, and rfb O157 genes were detected by a multiplex PCR as described by Leotta et al. (2005), whereas eae, ehxA, and fliC H7 genes were detected by PCR as described by Karch et al. (1993), Schmidt et al. (1995), and Gannon et al. (1997), respectively.
To determine Stx production, cytotoxicity assays on Vero cells were performed (Karmali et al., 1985). Enterohemolysis was determined on sheep blood agar plates (Beutin et al., 1989).
Subtyping of isolates
The analysis of stx 1 variants was conducted according to Zhang et al. (2002). Genotyping of stx 2 variants was done by RFLP analysis of the B-subunit-encoding DNA fragments obtained by PCR (Tyler et al., 1991).
Phage typing was performed with the method described by Ahmed et al. (1987) and extended by Khakhria et al. (1990), employing a set of 16 phages provided by the Canadian Centre for Human and Animal Health, Winnipeg, Manitoba, Canada, which allow the differentiation of 87 phage types (PTs).
PFGE protocols and data analysis of E. coli O157:H7 isolates were performed using the restriction endonucleases XbaI and BlnI (Promega, Madison, WI) following the standardized PulseNet methods from the Centers for Disease Control (Ribot et al., 2006). The Dice coefficient and the unweighted pair group method with arithmetic mean (UPGMA) were used to generate dendrograms with 1.5% tolerance values. The strains were grouped in a cluster when they showed identical XbaI-PFGE pattern (100% similarity).
Statistical analysis
The statistical analysis of the frequency of stx-genotypes and PTs between human and cattle strains was performed by the two-tailed Fisher's exact test, using InStat version 3.05 (GraphPad Software, San Diego, CA). A p-value of <0.05 was considered statistically significant.
Results
Characterization of isolates
All 280 STEC O157:H7 strains were non-sorbitol-fermenting and β-
All human and bovine strains harbored eae, ehxA, rfbO157, and fliC H7 genes. Most of the strains that carried the ehxA gene were hemolytic on sheep blood agar (95%); however, this activity was not detected in 14 strains of bovine origin. Expression of toxicity on Vero cells assays and flagella presence by slide agglutination was demonstrated in all isolates. Two hundred and nineteen (96.9%) of 226 human strains and 48 (89%) of 54 bovine strains were susceptible to all antibiotics assayed.
Subtyping of STEC O157 isolates
All 280 strains harbored the stx 2 gene, and 14 (5%) also carried the stx 1 gene. The stx-genotype analysis revealed that stx 2/stx 2c(vh-a) was predominant (72.1%) in strains of both origin, with a higher frequency in human (76.1%) than in bovine (55.5%) strains (p<0.05). The stx 2 variant was detected in both human (20.8%) and bovine (9.2%) strains. In human isolates, the stx 2c(vh-a) variant was detected in a low frequency (0.9%), whereas in bovine strains it was the second stx-genotype found (16.7%) (p<0.0001). The stx 1 gene in combination with other stx genes was more frequently detected in animal (16.6%) than in human (2.2%) strains (Table 1).
Frequencies between human and bovine strains are statistically
significant (p<0.05).
UT, untypeable.
A total of 20 PTs were identified among the 280 strains. Two hundred and fourteen (94.7%) human strains were categorized into 15 different PTs, and 12 (5.3%) strains belonged to the react but do not conform (RDNC) category of the current phage typing scheme. PT4 (37.6%), PT49 (24.3%), and PT2 (18.6%) were the most frequent (80.5%) PTs found. Bovine isolates were grouped into 12 PTs, and two (3.7%) strains were RDNC. PT2 (26%), PT39 (16.7%), and PT4 and PT49 (11.1% each) were predominant, representing 64.9% of the total. PT4 was strongly associated to human strains and PT39 to bovine strains (p<0.0001) (Table 2). PT14, PT24, PT36, PT37, PT40, PT47, PT50, and PT54 were only detected in human strains, whereas PT21, PT31, PT33, PT43, and PT51 were only found in bovine strains.
Relationships between stx-genotype and PT in STEC O157:H7 strains of both origins are shown in Table 3. In human strains, the stx 2/stx 2c(vh-a) genotype was mainly associated with PT49 (52/172, 30.2%), followed by PT4 (50/172, 29.1%) and PT2 (39/172, 22.7%), whereas in bovine strains this stx-genotype was mainly related to PT2 (12/30, 40%). It is important to highlight that the stx 2 genotype was strongly associated with PT4 (32/47, 68.1%) in human strains, and stx 2c(vh-a) to PT39 (6/9, 66.7%) in bovine strains. All four stx 1/stx 2 animal strains belonged to PT21.
UT, untypeable.
By XbaI-PFGE, all 280 STEC O157 strains generated 148 different patterns with at least 75% similarity. One hundred and sixty-nine strains were grouped in 37 clusters, and 111 strains showed unique patterns. Twenty-four clusters grouped exclusively human strains, eight were specific for bovine strains, and five clusters (III, VI, XVIII, XXIII, XXIX) included both human (38) and bovine (12) strains (Table 4).
Identical XbaI-PFGE-stx-PT profile combinations detected in strains of both origins are shown in boldface.
RDNC, react but does not conform to the current phage typing scheme; UT, untypeable.
Using the three subtyping techniques, the following PT-XbaI-PFGE-stx profile combinations were detected in strains of both origins: PT4-AREXH01.0011-stx 2/stx 2c(vh-a) (12 humans and one bovine), PT4-AREXH01.0543-stx 2/stx 2c(vh-a) (one human and four bovines), PT2-AREXH01.0076-stx 2/stx 2c(vh-a) (one human and four bovines), PT49-AREXH01.0175-stx 2/stx 2c(vh-a) (seven humans and one bovine), and PT49-AREXH01.0022-stx 2/stx 2c(vh-a) (seven humans and one bovine) (Fig. 1).

Clonal relatedness by XbaI- and BlnI-PFGE, and phage types in human and bovine Escherichia coli O157:H7 stx2/stx2c (vh-a) strains with identical profile combinations. HUS, hemolytic uremic syndrome; BD, bloody diarrhea; NBD, nonbloody diarrhea; HC, healthy carriers.
Using BlnI as second enzyme, all human and bovine strains of PT49-AREXH01.0175-stx 2/stx 2c(vh-a) and PT49-AREXH01.0022-stx 2/stx 2c(vh-a) profiles were not discriminated. The bovine strain belonging to the PT4-AREXH01.0011-stx 2/stx 2c(vh-a) profile combination showed identical BlnI-PFGE pattern with five of 12 human strains. Human strains belonging to PT4-AREXH01.0543-stx 2/stx 2c(vh-a) and PT2-AREXH01.0076-stx 2/stx 2c(vh-a) profile combinations could be discriminated from the bovine strains, but showed patterns with 91.9% and 89.5% similarity, respectively (Fig. 1).
The analysis of the most frequent PTs and stx-genotypes revealed an equal distribution among strains associated with different clinical symptoms (Table 5). STEC O157 strains harboring stx 2/stx 2c(vh-a) genes belonging to PT4, PT49, and PT2 were predominant.
HUS, hemolytic uremic syndrome; BD, bloody diarrhea; NBD, nonbloody diarrhea.
Discussion
Previous studies indicate that the clinical outcome of STEC infection depends on the stx genotype of the infecting strain (Jelacic et al., 2003; Persson et al., 2007), and that there exists an increased risk for developing HUS when both stx 2 and eae genes are present (Böerlin et al., 1999). By stx-genotyping, we found that the stx 2/stx 2c(vh-a) genotype was predominant in strains isolated from both human (76.1%) and bovine (55.5%). Moreover, stx 2 was detected in human and bovine strains (20.8% vs. 9.2%), whereas the stx 2c(vh-a) gene was predominant in the animal reservoir (16.7%) but not in humans (0.9%). The stx 1 gene was always detected together with other genes. The stx 1/stx 2/stx 2c(vh-a) genotype was harbored by nine (3.2%) strains: five of them isolated from HUS (n=2), BD (n=2), and NBD (n=1) cases.
A number of studies have documented that stx 2/stx 2c(vh-a) genotype is more often associated with HUS than other stx 2 genotypes (Friedrich et al., 2002; Eklund et al., 2002). Our findings that stx 2/stx 2c(vh-a) is prevalent in strains of both origins is relevant because this stx-genotype was also predominant in other countries. In Sweden, Aspán and Erikson (2010) reported that STEC O157:H7 strains characterized as being PT4:stx 2/stx 2c(vh-a) were the cause of most cattle-to-human transmitted STEC in the 1996–2002 period. In Finland, Eklund et al. (2002) found that 64% of human STEC O157 isolates carried stx 2/stx 2c genes, and the virulence profile PT2:stx 2/stx 2c/eae/ehxA was significantly more frequently associated with HUS and BD than other profiles. Moreover, Manning et al. (2008) found that this stx-genotype was predominant among strains of the clade 8 lineage associated with two unusually severe outbreaks linked to fresh produce. Recent studies performed in Argentina using LSPA-6 to identify lineages (Yang et al., 2004) and clade typing (Manning et al., 2008) show that lineage I/II-clade 8 strains predominate in human isolates (>80%) and may explain the high incidence of HUS in our country (unpublished data).
In contrast, Nakamura et al. (2008) in Japan found that the predominant stx-genotype in human patients was stx 2 (68.7%), whereas the strains from asymptomatic carriers possessed only stx 2c(vh-a) (47.9%), and the stx 1 gene was found in a few isolates (1.5%). Meanwhile, cattle harbored mainly stx 2c(vh-a) (58.4%), followed by stx 2 (26.0%) and stx 2/stx 2c(vh-a) (10.4%).
We found 20 different known PTs among the 280 isolates of STEC O157 studied, but only three types were predominant in human strains, PT4 (37.6%), PT49 (24.3%), and PT2 (18.6%), whereas four were predominant in bovine strains, PT2 (26%), PT39 (16.7%), and PT4 and PT49 (11.1% each). In Denmark, Roldgaard et al. (2004) found that PT2 (19%) and PT4 (28%) were also predominant in human isolates, but these PTs were only identified in 2% and 8%, respectively, of the bovines isolates. In the same study, PT8 and PT14 constituted approximately 35–40% of isolates from both origins. PT8 was responsible for 27% of human cases, and PT14 was the most predominant PT in cattle (22%). In the present study, PT8 was found in a very low frequency in human (1.3%) and bovine (3.7%) isolates, and PT14 was only found in clinical isolates (3.5%). Rivas et al. (2006) found one PT8:stx 2/stx 2c(vh-a) strain isolated from a BD case who developed HUS, and three PT14:stx 2/stx 2c(vh-a) strains isolated from BD cases, during a prospective case-control study carried out in 2001–2002. Chinen et al. (2001) found 2/11 (18.2%) strains of PT14 harboring the stx 2/stx 2c(vh-a) and stx 2c(vh-a) genotypes, which were isolated from ground beef and fresh sausage, respectively, during a survey performed in 136 retail meats. Moreover, 2/20 (10%) E. coli O157:H7 strains characterized as PT8:stx 2/stx 2c(vh-a) and PT14:stx 1/stx2c(vh-a) were isolated from undercooked beef burger during sampling procedures in fast food restaurants (Chinen et al., 2009). In Spain (Mora et al., 2004), Germany (Beutin et al. 2002), and Denmark (Roldgaard et al., 2004), PT8 strains showed a high association with stx 1 and were mainly non-motile. In Argentina, all 280 strains were motile, and this could be another important virulence factor.
Between 1998 and 2004, PT21/28 was described as the most frequent PT in the United Kingdom, comprising over 50% of the positive cattle isolates and reported human cases, suggesting a link between bovine shedding and human infection (Pearce et al., 2009). In Argentina, PT21/28 has never been found.
We found a marked overlap between the PT-stx profiles in strains isolated from cattle and those recovered from human diseases. The profiles PT49:stx 2/stx 2c(vh-a) (30.2% vs. 20%), PT4:stx 2/stx 2c(vh-a) (29.1% vs. 20%), and PT2:stx 2/stx 2c(vh-a) (22.7% vs. 40%) were predominant in strains of both origins (Table 3). However, some PT-stx-genotype profiles were exclusively found in the bovine reservoir. These findings are consistent with the notion that only a subset of bovine O157:H7 is implicated in human disease.
In this study, it was not possible to establish a relationship between the stx-genotypes found in human strains and the clinical symptoms, probably due to the high rate of stx 2/stx 2c(vh-a) genotype (>60%) observed in Argentina throughout the years (Rivas et al., 2011). Other methods, such as stx expression and the amount of toxin produced, could be used to further relate the severity of the infections to particular subtypes.
The molecular surveillance of STEC has been implemented through PulseNet Latin America and The Caribbean. From 1988 to 2010, a total of 780 XbaI-PFGE patterns corresponding to 1,954 STEC O157 strains isolated from human infections (n=1,693), food (n=185), animals (n=191), and environmental samples (n=35) were included in the Argentine Database for O157.
In the present work, E. coli O157 strains showed a high degree of diversity. A total of 148 different XbaI-PFGE patterns were established among the 280 strains studied, with the strains that yielded identical patterns grouped in clusters. The five common XbaI-PFGE patterns identified in both human and bovine strains in the present study had been previously included in the National Database. These patterns corresponded to strains isolated from HUS (n=120), BD (n=94), NBD (n=52), cooked and uncooked ground meat (n=18), sausages (n=2), and water streams (n=1), indicating that they are widespread in human population, and are also detected in food and in the environment. Two of these common patterns, AREXH01.0011 and AREXH01.0022, are predominant in the Argentine Database of E. coli O157, representing 23.1% and 13.7%, respectively.
The AREXH01.0011 pattern is identical to SMI-H and EXH01.0047 patterns, described as predominant in Sweden and the United States, respectively. The Swedish type has also the other characteristics of the Argentine type, i.e., PT4 and stx 2/stx 2c(vh-a) genes (Löfdahl, 2008). It would be of great value to perform the surveillance of this type more carefully in the rest of the world.
A total of 28 of 226 (12.4%) human strains showed identical PT-XbaI-PFGE-stx profile combinations as those found in 11 of 54 (20.4%) cattle strains. Some STEC strains of both origins could be discriminated using BlnI as second enzyme. Although they must be considered as different, they presented a certain degree of similarity that should be evaluated in the epidemiologic context. This overlap of human and bovine strains indicates that cattle are important reservoir for humans. It was possible to link 12% of reported human infections to the bovine reservoir by analyzing a very small proportion from the total cattle at slaughter in Argentina, estimated as approximately 21 million heads in the period under study (IPCVA, 2011).
The STEC prevalence in cattle and the high consumption of beef in Argentina are a risk for human population. Recently, a more extensive investigation on STEC O157 in nine selected beef exporting abattoirs of Argentina showed a prevalence of 4.1% (CI 95%, 5.6–2.9%) in the fecal content and 2.6% (CI 95%, 3.9–1.6%) in the carcasses of 811 bovines at slaughter (Masana et al., 2010). From these data, and slaughter statistics, it could be roughly estimated that a proportion of around 38,000 bovines were contaminated with STEC O157 in their feces at slaughter per each reported human case. This should be taken into account to determine control and prevention guidelines aimed at reducing the burden of these diseases in our country.
Conclusion
This study showed that the use of phage typing, PFGE, and stx-genotyping techniques as epidemiological tools that may help to detect reservoirs, and establish temporal and geographical variations of newly emerging clones. However, other typing methods must be employed to relate the subtypes to the severity of the associated-illnesses.
Footnotes
Acknowledgments
We are grateful to Ariela Baschkier and Elisabet Vilacoba, for their technical assistance. We also thank all participating laboratories for their contribution to the National Health Surveillance. This project was partially supported by a grant from the Research Program of the Instituto de Promoción de la Carne Vacuna Argentina (Argentine Beef Promotion Institute), and public funds of the Research Project AETA3692 of the Instituto Nacional de Tecnología Agropecuaria de Argentina (National Institute for Agricultural Technology, INTA).
Disclosure Statement
No competing financial interests exist.
