Abstract
The purposes of this study were to detect non-O157 Shiga toxin–producing Escherichia coli (STEC) in bovine rectums and water in a beef cattle farm in Argentina, and to determine the pathogenic potential of the circulating strains. During the study, 292 rectal swabs from healthy animals and 79 environmental water samples were collected. The rectal swabs and one loop of the Moore swabs, enriched in Escherichia coli broth for 24 h at 37°C, were streaked on MacConkey agar plates and incubated overnight at 37°C. The isolates were characterized by biochemical tests and serotyped. Nonmotile STEC strains were typed for their H-specific (fliC) antigens by polymerase chain reaction (PCR). Isolates were characterized by detection of stx 1 , stx 2, and their variants, eae, ehxA, and saa genes. Macrorestriction fragment analysis by pulsed-field gel electrophoresis (PFGE) was performed using the PulseNet standardized protocol. From 371 samples analyzed, 36.6% of rectal swabs and 34.2% of water samples were non-O157 STEC-positive by PCR, and 110 strains from rectal swabs, but only three from water, were isolated. The strains were grouped into 24 different serotypes, from which, O103:[H2] (n=12), O136:H12 (n=8), O178:H19 (n=8), and O103:NM (n=5) were most prevalent, representing 29.2% of the isolates. Predominant genotypes were stx 1/eae/ehxA (16.8%) and stx 2/saa/ehxA (15.9%). PFGE analysis revealed 56 different patterns, with 65 strains grouped in 19 clusters of 100% similarity. Two STEC O124:H19 strains isolated from rectal swabs and water with a 5-month interval harbored the stx 1/stx 2/saa/ehxA genotype, and showed an indistinguishable PFGE profile. By comparison, some XbaI-PFGE patterns identified in the present study were identical to the profiles of strains isolated from human, food, and animal sources included in the Argentine PulseNet database. By PCR, similar non-O157 detection rates were found in rectal swabs and water. However, the methodology for water samples needs to be improved, since only three strains from the total number of positive samples were recovered.
Introduction
S
Materials and Methods
Between September 2005 and November 2006, 292 rectal swabs from healthy cattle and 79 water samples from two streams were collected. The sample collection used was the same as that described in a previous study (Tanaro et al., 2010). Sample size was calculated using the Epi Info software (version 6.0), taking into account an estimated frequency of 10% and a precision of 1.5% at the 95% confidence level. Rectal swabs were plated directly in situ on MacConkey agar (Biokar Diagnostics, Beauvois, France) and incubated overnight. After incubation, the confluent growth zone and individual colonies were screened for stx 1, stx 2, and rfb O157 genes by a multiplex polymerase chain reaction (PCR) (Leotta et al., 2005). At least 30 presumptive E. coli colonies were selected from each MacConkey plate for PCR confirmation.
Moore swabs were placed in flasks with 100 mL of Escherichia coli broth (Biokar Diagnostics, Beauvois, France) and incubated overnight at 37°C. After incubation, a loop from each enrichment broth was streaked on MacConkey agar and processed as was described for rectal swabs.
Presumptive non-O157 STEC colonies from each PCR-positive fecal and water sample were isolated on Trypticase Soy Agar (TSA; Difco, Becton Dickinson, Franklin Lakes, NJ), confirmed by multiplex PCR, and kept in Trypticase Soy Broth (TSB; Difco, Becton Dickinson) with 40% glycerol at −70°C for further phenotypic and genotypic characterization.
Phenotypic and genotypic characterization of the isolates
Confirmation of isolates as E. coli was performed through biochemical tests according to Ewing (1986). Serotyping was conducted by standard procedure of Ewing (1986), with somatic (O1-O181) and flagellar (H1-H56) antisera prepared at the Adolfo Lutz Institute (São Paulo, Brazil), with reference strains obtained from the E. coli and Klebsiella International Reference Centre (Copenhagen, Denmark). The H types of some nonmotile STEC strains were investigated for their H-type-specific (fliC) genes by restriction fragment length polymorphism analysis (RFLP) of the DNA fragments obtained by PCR as described by Machado et al. (2000). Enterohemolysis was determined on sheep blood agar plates according to Beutin et al. (1989). Isolates were characterized by detection of stx 1 and stx 2 genes by the multiplex PCR as mentioned above, while eae, saa, and ehxA genes were investigated as described by Karch et al. (1993), Paton and Paton (2002), and Schmidt et al. (1995), respectively.
Subtyping of the isolates
The analysis of stx 1 variants was conducted according to Zhang et al. (2002). Genotyping of stx 2 variants was done by RFLP analysis of the B-subunit–encoding DNA fragments obtained by PCR (Pièrard et al., 1998; Tyler et al., 1991). Macrorestriction fragment analysis by pulsed-field gel electrophoresis (PFGE) was performed using the 24-h PulseNet standardized PFGE protocol for E. coli O157:H7 (Ribot et al., 2006). Restriction digestion of DNA was carried out with XbaI enzyme (Promega, Madison, WI). PFGE images of gels were obtained by Gel Doc 2000 (Bio-Rad, Hercules, CA). Analysis of TIFF images was carried out through the BioNumerics version 4.61 software package (Applied Maths, Sint-Martens-Latem, Belgium) using the Dice coefficient and the Unweighted Pair Group with Arithmetic Mean to generate dendrograms with 1.5% tolerance values.
Statistical analysis
The statistical analysis to find differences between the numbers of isolated strains in different seasons was made by differences between proportions, using the StatPlus 2009-5.7.8 program.
Results
Prevalence of non-O157 STEC strains
From the 371 samples analyzed, 107/292 (36.6%) rectal swabs (one per cow) and 27/79 (35.4%) water samples were PCR-positive for the presence of non-O157 STEC. A total of 113 strains were isolated, 110 from rectal swabs, and three from water samples. More than one serotype was detected in 3/292 (1%) animal samples (Table 1).
95% CI, 95% confidence interval.
Figure 1 shows the number of samples analyzed and the PCR-positive rectal swabs and environmental water samples detected. The prevalence of non-O157 STEC in feces fluctuated with statistical differences (p<0.05) from 52.7% (39/74) in winter to 37.5% (27/72) in autumn (p=0.03), 36.1% (26/72) in summer (p=0.02), and 20.3% (15/74) in spring seasons (p=0.0001). There were also statistical differences between spring and autumn (p=0.01), and spring and summer (p=0.02), but there were no statistical differences between autumn and summer (p>0.05). In water samples, the frequency was 42.9% (12/28) in spring, 37.5% (6/16) in autumn, 26.7% (4/15) in summer, and 25.0% (5/20) in winter seasons with non-statistical differences (p>0.05).

Distribution of non-O157 Shiga toxin–producing Escherichia coli (STEC) polymerase chain reaction (PCR)–positive and PCR-negative samples per season, in a longitudinal study from a cattle farm in Argentina.
Characterization of non-O157 STEC isolates
One hundred thirteen non-O157 STEC isolates were characterized by phenotypic and genotypic techniques, and serotyped, and 102 were analyzed by XbaI-PFGE. Most of the non-O157 strains were sorbitol fermenting (93.6%), and β-glucuronidase (86.7%) and enterohemolysin (56.6%) positive, and motile (82.3%).
Among the 113 non-O157 STEC isolates, 71 belonged to 20 O-groups (O2, O7, O8, O15, O22, O79, O84, O91, O103, O107, O113, O116, O124, O130, O136, O141, O163, O174, O178, and O179), while 35 isolates were nontypeable (NT) and seven were rough (R). Twelve H antigens (H2, H7, H8, H11, H12, H16, H19, H21, H25, H27, H28, and H49) were determined in 90 strains, while 20 strains were nonmotile (NM) and three nontypeable (NT). Non-O157 STEC strains were grouped into 24 different serotypes, being O103:[H2] (n=12), O136:H12 (n=8), O178:H19 (n=8), and O103:NM (n=5), the most prevalent serotypes, representing 29.2% (33/113) of the total. Among nontypable somatic strains, ONT:H2 (n=17) was the most prevalent one (Table 2). It is interesting to notice that in three cattle the following STEC co-infections were detected: ONT:H2/O174:H28; ONT:H19/O130:H11; and ONT:H19/O103:[H2].
The [H2] antigen was determined by polymerase chain reaction–restriction fragment length polymorphism (PCR-RFLP).
Nonmotile.
Nontypeable.
Serotypes reported as human pathogens worldwide are shown in boldface, and serotypes reported as human pathogens in Argentina are underlined.
Eighty-four (74.3%) strains harbored the stx 2 gene and 47 (41.6%) the stx 1 gene. In the strains isolated from cattle, different variants were detected: stx 1 (26.4%), stx 2 (17.3%), stx 2c(vh-a) (14.5%), stx 1/stx 2 (13.6%), stx 2c(vh-b) (11.8%), stx 2c(vh-a)/stx 2c(vh-b) (5.4%), stx 2/stx 2c(vh-b) (4.5%), stx 2/stx 2c(vh-a) (1.8%), stx 1/stx 2c(vh-b) (1.8%), stx 2NT (1.8%), and stx 1/stx 2/stx 2c(vh-b) (0.9%). In the three water strains, the detected stx-genotypes were stx 2, stx 2c(vh-a), and stx 1/stx 2. Other virulence genes such as eae (18.6%), ehxA (56.6%), and saa (38%) were also determined. Seventeen different virulence genotypes were established, with stx 1/eae/ehxA (19 strains), stx 2/saa/ehxA (18 strains), stx 1/stx 2/saa/ehxA (16 strains), stx 2c(vh-a) (15 strains), stx 2c(vh-b) (11 strains), and stx 1 (10 strains) being the most frequent (Table 3).
Major genotypes reported as human pathogens in Argentina are underlined.
Twenty-one (18.6%) strains, of O103:[H2] (n=12), O103:NM (n=5), ONT:H21 (n=2), and ONT:HNT (n=2) serotypes, carried the eae and ehxA genes. Forty-three (38%) strains, belonging to ONT:H19 (n=7), O116:H21 (n=4), O178:H19 (n=4), O141:H49 (n=3), O179:H8 (n=3), O113:H21 (n=2), O113:HNM (n=2), O8:H16 (n=3), O163:H19 (n=3), ONT:H21 (n=3), O124:H19 (n=2), O8:H19 (n=1), O79:H28 (n=1), O91:H21 (n=1), O130:H11 (n=1), O174:H28 (n=1), ONT:HNT (n=1), and OR:H19 (n=1) serotypes, carried the ehxA and saa genes.
The clonal relatedness of 102 non-O157 STEC strains was established by XbaI-PFGE. In addition, 11 isolates were excluded from the analysis because of bacterial lyses. PFGE analysis showed 56 different patterns with 67.6% similarity, with 65 strains grouped in 19 clusters (I–XIX) of two to eight strains each and 100% similarity (Table 4). Unique patterns were observed for 37 strains. The cluster XIV grouped two O124:H19 strains isolated from rectal swabs and water in October 2005 and February 2006, respectively. We can speculate that the water was contaminated with manure, and the clone persisted in the environment for almost 5 months. Some clones remained within the herd for several months, ONT:H21 strains (clusters III and XII) for 7 months; ONT:H2 (cluster II) and O178:H19 (cluster XIII) for 4 months; and ONT:H19 (cluster I) and O107:H7 (cluster XIX) for 3 months. Among the O178:H19 strains, three different clusters were detected (IV, V, and XIII). Strains O178:H19 from clusters IV and V showed 88.2% similarity with only four band differences, and 70% similarity with strains from cluster XIII.
Bovine rectal swabs.
Water.
PFGE, pulsed-field gel electrophoresis.
Discussion
The prevalence of non-O157 STEC in cattle rectums was on average 36.6% (95% confidence interval, 31.3–42.3%). In previous studies from Argentina, Meichtri et al. (2004) found 69% STEC prevalence and Masana et al. (2011) reported a 22.3% prevalence of non-O157 STEC in feces of bovines. This variation could be attributed to differences in sampling procedures, age and weight of the animals, and feeding system.
In the present study, different types of animals bought by the farmer in fairs of Entre Ríos province were included. The herd grazed freely in open pasture during the day, and at night the animals received a grain supplementation. Once cattle reached a weight of at least 650 pounds (300 kg), they were transported to a local slaughterhouse.
The prevalence of non-O157 STEC in water was 34.2% (95% confidence interval, 24.4–45.1%). STEC O124:H19 strains with identical genotype and PFGE pattern were recovered from bovine and water sources. The sedimentary layers of water-troughs have been indicated as a possible environmental reservoir (Hancock et al., 1998).
We found that 42.5% (48/113) of non-O157 STEC isolates belonged to serotypes associated with human disease worldwide, including Argentina. This frequency was lower than those reported by Masana et al. (2011) (53.6%) and Meichtri et al. (2004) (51.2%). The isolated strains could be sorted into four seropathotype groups described by Karmali et al. (2003). Seventeen (15%) STEC O103:[H2] and O103:NM strains belonged to seropathotype B. This widespread serotype has been associated with HUS cases in Argentina (Rivas et al., 2006) and has also been isolated from cattle and beef products (Blanco et al., 2004; Bettelheim et al., 2007; Masana et al., 2011). However, the serotypes O26:H11, O111:HNM, O121:H19, and O145:HNM, also included in seropathotype B, were not detected during the study.
Twenty-one (18.6%) STEC strains of O178:H19, O113:H21, O163:H19, O22:H8, O8:H19, O15:H27, O91:H21, O130:H11, and O174:H21 serotypes belonged to seropathotype C (Table 2). STEC O178:H19 strains were reported as the cause of an HUS case in Argentina (Giugno et al., 2007). STEC O113:H21 is an important serotype associated with HUS and hemorrhagic colitis in humans worldwide, including Argentina (Brett et al., 2003; Rivas et al., 2006). It was also recovered from ground beef (Bosilevac and Koohmaraie, 2011) and is one of the most frequent serotypes in Argentine cattle (Masana et al., 2011). STEC O22:H8 and O91:H21 strains have been isolated from HUS cases (Blanco et al., 2004; Lindgren, 1993). The frequency of STEC O8:H19 (0.9%) found in the present study was lower than that reported by Meichtri et al. (2004) (12.9%) and Masana et al. (2011) (7.9%). Isolates of serotypes O8:H16, O179:H8, O113:NM, O22:H16, and O84:H2 that occasionally produce a mild disease (seropathotype D) represented 8.8% (10/113) of the isolates. Non-O157 STEC strains included in seropathotype E represented 57.5% of the isolates.
The ability of STEC strains to produce bloody diarrhea and HUS in humans has been associated mainly with the expression of stx 2 gene variants, especially in combination with the eae gene (Böerlin et al., 1999). Similarly to other studies conducted in the Argentine bovine reservoir, most strains were stx 2 +(74.3%) alone or combined with stx 1. The four most frequent genotypes—stx 1/eae/ehxA; stx 2/saa/ehxA; stx 1/stx 2/saa/ehxA; and stx 2c(vh-a)—were detected with incidence rates of 16.8% to 13.3%. Forty-three (38%) non-O157 STEC strains carried the saa gene, but only 21 (18.6%) harbored the eae gene. The ehxA gene was present in 64 (56.6%) strains, associated with saa (38%) or eae (18.6%) genes. The stx 1/eae/ehxA genotype was harbored by 12 strains of O103:[H2], five of O103:NM, and two of ONT:H21 serotypes. The stx 2/eae/ehxA and stx 2c(vh-a)/eae/ehxA genotypes were harbored by two nontypeable strains.
When the XbaI-PFGE patterns were compared with those included in the Argentine PulseNet Database, the following matches were identified: two O22:H8/stx 2c(vh-b) strains included in cluster XI showed an identical AREZJX01.0005 pattern to one strain isolated from an HUS case (2008) and two strains isolated from hamburgers (2008). Two O178:H19/stx 2c(vh-b) strains of cluster IV showed an identical AREXSX01.0324 pattern to one strain isolated from ground beef in 2006, and another two strains of cluster V had an identical AREXSX01.0326 pattern with one strain isolated from ground beef in 2007. Some strains characterized in this study showed identical XbaI-PFGE profiles with strains isolated from bovines in other Argentine provinces (Masana et al., 2011). Only two strains with identical serotype, genotype, and PFGE profile were recovered from rectal swabs in October 2005 and water in February 2006, which indicates bovine manure as a source of STEC contamination to environmental water. On the other hand, the identification of identical clones isolated in different periods of time highlights the importance of the horizontal fecal-oral transmission of these pathogens among cattle.
The prevalence of non-O157 STEC in bovine rectums during the present survey, with a higher frequency in winter (52.7%), p<0.05, did not show the expected distribution along the seasons (Fig. 1). Heavy rains (240.5 mm) and unusual temperature (10.6–19.8°C) in May, June, and July (the winter) might have contributed to the great pollution of the water (Boletín Climatológico, 2006).
Conclusion
By PCR screening, a similar prevalence of non-O157 STEC was found in cattle rectums (36.6%) and water (34.2%). However, the strain recovery from water samples was lower than those from animal sources. Culture-based methods in this kind of water samples need to be improved. By comparison, some of the strains found in this study showed XbaI-PFGE patterns indistinguishable from those isolated from HUS cases, and meat and animal samples included in the National PulseNet Database. Two O124:H19 strains of stx 1/stx 2/saa/ehxA genotype with indistinguishable profile were isolated from rectal swabs and water with a 5-month interval. The results of the present study reinforce the assumption of manure as a source of contamination and the need to establish preharvest control strategies to reduce the transmission of these group of pathogens among cattle and also to food crops, water, and the environment.
Footnotes
Disclosure Statement
No competing financial interests exist.
