Abstract
Emergence of carbapenem-resistant Enterobacteriaceae has become a substantial global health problem. The aim of this study was to analyze carbapenem-resistant isolates of Enterobacter cloacae that have emerged for the first time in the intensive care unit (ICU) at the University Hospital Centre Split, Croatia. The strains were selected in the period between June and August 2012, according to their susceptibility patterns to carbapenems. Resistant isolates were screened for metallo-β-lactamase (MBL) production with the use of the imipenem-EDTA disk synergy test, and positive findings were confirmed by PCR. The type of VIM β-lactamase gene was determined by sequencing of PCR products. The genetic relatedness was evaluated using pulsed-field gel electrophoresis analysis. The demographic and clinical data were retrospectively analyzed from medical records. Five patients were infected and one patient was colonized with a single clone of multidrug-resistant VIM-1-producing E. cloacae susceptible only to colistin. Three cases of lower respiratory tract infections, one case of bacteremia, and one case of intra-abdominal infection were identified. All cases were hospital-acquired after prolonged stay in ICU. All patients had serious underlying diseases and received a broad-spectrum antibiotic. Four patients died and two had unimprovable medical condition at the time of discharge from the hospital. MBL-producing E. cloacae can cause fatal infection in severely ill patients. Monoclonal outbreak highlights the need for continuous surveillance and good infection control practices to prevent further spread since the antibiotic therapy options for infections caused by such strains are strongly limited.
Introduction
E
Until now, and to the best of our knowledge, this is the first monoclonal outbreak of infection due to MDR VIM-1-producing E. cloacae in Croatia. The aim of this study was to describe the antimicrobial resistance, clinical background, type of β-lactamase genes, and genetic relatedness among carbapenem-resistant strains of E. cloacae isolated from patients in ICU at the University Hospital Centre Split, Croatia.
Materials and Methods
Patients and isolates
The strains were selected among those isolated from ICU patients in the period between June and August 2012, according to their susceptibility patterns to carbapenems. All isolates, with reduced susceptibility to at least one tested carbapenem, were consecutively collected for the study. Species identification was confirmed by Vitek 2 Compact (bioMérieux, Marcy l'Etoile, France).
The demographic and clinical data (sex, age, underlying diseases, date of patients' admission to ICU, date of isolation of resistant strain, site of infection or colonization, coinfection, antimicrobial treatment administered before and after isolation of E. cloacae, mechanical ventilation, data from laboratory tests such as white blood cell count and C-reactive protein, overall outcome at the time of discharge from the hospital, or death) were retrospectively analyzed from medical records.
Antimicrobial susceptibility testing
The antibiotic susceptibility testing was performed by the disk diffusion method (Bio-Rad, Marnes-la-Coquette, France) for ampicillin, amoxicillin/clavulanic acid, and cefoxitin.
Minimum inhibitory concentrations (MICs) were determined by using the E-test method (AB Biodisk, Solna, Sweden) and Vitek 2 Compact automated system for the following antibiotics: piperacillin/tazobactam, cefuroxime, cefixime, ceftazidime, cefotaxime, ceftriaxone, cefepime, gentamicin, amikacin, netilmicin, tobramycin, ciprofloxacin, levofloxacin, tigecycline, trimethoprim–sulfamethoxazole, imipenem (IMP), meropenem (MEM), ertapenem, and colistin. The results were interpreted according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST) guidelines (www.eucast.org). ESBL production was screened by double-disk synergy test (DDST) using amoxicillin–clavulanic acid opposite to cefotaxime and ceftazidime disks. Positive finding was confirmed by Vitek 2 Compact automated system. All isolates with increased MICs for carbapenems (>2 mg/L for IMP, >2 mg/L for MEM, and >0.5 mg/L for ertapenem) were phenotypically screened for MBL production by IMP/IMP-EDTA DDST, and positive findings were sent to the Reference Center for Antibiotic Resistance Surveillance for genetic analysis of resistance mechanisms. 14
PCR detection and identification of MBL genes
Total bacterial DNA was extracted with a QIAamp DNA mini kit (Qiagen GmbH, Hilden, Germany). Detection of MBL genes, blaVIM, blaIMP, and blaNDM, was performed by PCR using primers and conditions reported previously.2,19 Additional PCR was performed on VIM-positive isolates to determine the type of VIM genes using primers VIM-1L and VIM-1R specific for blaVIM-1-related genes (blaVIM-1, blaVIM-4, blaVIM-5, and blaVIM-11a), and VIM-2L and VIM-2R specific for blaVIM-2-related genes (blaVIM-2, blaVIM-3, blaVIM-6, blaVIM-8, blaVIM-9, blaVIM-10, and blaVIM-11b). PCR conditions used were described previously. 4 For sequencing of the blaVIM coding regions, the VIM-1L/VIM-1R PCR products were purified with the QIAquick PCR purification kit (Qiagen GmbH). Amplicons were directly sequenced on both DNA strands using sets of VIM-1L/VIM-1R primers and BigDye Terminator Kit (PE Applied Biosystems, Foster City, CA). Sequences were analyzed using ABI prism 310 DNA Sequencer (PE Applied Biosystems). Resulting sequences were compared with those available in GenBank (www.ncbi.nih.gov/BLAST).
Clonal relatedness
Pulsed-field gel electrophoresis (PFGE) of XbaI-digested genomic DNA of bacterial isolates included in this study was performed, 7 and DNA patterns were interpreted as previously recommended. 22
Results
In a 3-month period in 2012, five patients were infected and one patient was colonized with MDR VIM-1-producing E. cloacae strain susceptible only to colistin.
The clinical and demographic characteristics of the infected/colonized patients are summarized in Table 1. The median age was 47 years (range, 28–60 years) and five patients (83.3%) were male. All patients had serious underlying diseases: case 1 had soft palate neoplasm with metastases, two patients had complicated intracranial hemorrhage (cases 2 and 5), one patient (case 3) had complicated medical conditions, including acute respiratory distress syndrome (ARDS) and diffuse peritonitis, case 4 had polytrauma with splenic rupture and pulmonary contusion, and case 6 had multiple abscesses and sepsis with ESBL-positive Klebsiella pneumoniae. All six patients received broad-spectrum β-lactam antibiotics, including cephalosporins (cases 1, 2, 4, and 5) and β-lactam/β-lactamase inhibitor combinations (cases 3, 5, and 6). Three patients were receiving an MEM when VIM-1-producing E. cloacae was isolated (cases 2, 5, and 6). One patient was already receiving colistin when the infection occurred. All patients were on mechanical ventilation.
M, male; F, female; AVM, arteriovenus malformation; CVI, cerebrovascular insult; ARDS, acute respiratory distress syndrome; SAH, subarachnoid hemorrhage; WBC, white blood cell count; CRP, C-reactive protein; CRO, ceftriaxone; MEM, meropenem; SAM, ampicillin/sulbactam; CIP, ciprofloxacin; MET, metronidazole; AMK, amikacin; SXT, sulfamethoxazole–trimethoprim; CAZ, ceftazidime; COL, colistin; VAN, vancomycin; CLI, clindamycin; LZD, linezolid; TZP, piperacillin/tazobactam; ICU, intensive care unit.
All isolates were considered hospital-acquired. The median time from ICU admission to the isolation of an MBL-producing strain was 16 days (range, 7–30 days). All patients had spatiotemporal epidemiological links in the ICU. Of the six resistant isolates, three were isolated from the lower respiratory tract, whereas the remaining strains were isolated from blood, abdominal cavity, and rectal swab. Five cases of clinical infection and one case of colonization with MBL-producing organism have been documented. Four (80%) of five infected patients died. Among them, three patients (case 1, 3, and 4) died before susceptibility results were available. Patient 6 failed to respond to treatment with amikacin and colistin and had a fatal outcome. Although adequate therapy is essential to treat infections caused by MBL-producing bacteria, the severity of underlying conditions is also important factor for overall outcome. Two patients have been transferred to other hospitals; patient 2 was treated with colistin and patient 5 was considered colonized without local and general signs of infection. Both patients had positive findings of MBL-producing organism at the time of hospital discharge.
All isolates showed high-level resistance to broad-spectrum cephalosporins and inhibitor-protected penicillins (piperacillin/tazobactam and ampicillin/clavulanic acid). Only one strain was ESBLs producer. All six isolates were resistant to all tested quinolones, tobramycin, netilmicin, gentamicin, and trimethoprim–sulfamethoxazole. Carbapenems were affected to different degrees (MIC, 1 to >32 mg/L). All strains were resistant to ertapenem (MIC range, 1 to >32 mg/L). Susceptibility to IMP and MEM was variable; isolate 1 was susceptible to IPM and MEM (MIC, 2 mg/L); isolate 2 was susceptible to MEM (MIC, 2 mg/L) and intermediate to IPM (MIC, 4 mg/L); isolate 3 had reduced susceptibility to MEM (MIC, 4 mg/L) and IMP (MIC, 6 mg/L); and the remaining three strains (isolates 4, 5, and 6) were resistant to MEM and IMP (MIC range, 8 to >32 mg/L). MIC values for amikacin showed intermediate susceptibility (MIC, 16 mg/L). Colistin was the only susceptible antibiotic for all six strains (MIC, ≤0.5 mg/L).
All isolates yielded positive results of the EDTA-IMP disk synergy test. PCR confirmed the presence of blaVIM-1 gene in all clinical isolates. The characterization of six VIM-1-producing E. cloacae isolates by PFGE revealed that all of them were clonally related, showing an indistinguishable PFGE pattern (data not shown).
Discussion
Carbapenems are important therapeutic agents for the treatment of hospital-acquired infections caused by MDR gram-negative bacteria, especially those carrying genes for ESBLs and derepressed AmpC β-lactamases. The emergence and dissemination of acquired MBLs among gram-negative organisms have become a substantial global health problem and represent a significant threat to the management of nosocomial infections because of the lack of any effective antimicrobial agents. 3
However, the carbapenem resistance among Enterobacteriaceae family is still rare in Croatia. Here, we report the first detection and describe the first monoclonal outbreak of infections due to MDR VIM-1-producing E. cloacae at the University Hospital Center Split, Croatia. The emerged strain showed high-level resistance to all clinically available antimicrobial agents except to colistin. MICs of carbapenems were variable. Differences in the carbapenem resistance levels among isolates of the same PFGE type were also observed in other studies and may be due to variable expression of the MBL gene or existence of additional resistance mechanisms.9,15,21 The mobile nature of MBL genes and their frequent association with other resistance genes make them an extremely potent threat for managing the nosocomial infections. Moreover, findings of clonally related VIM-1-producing E. cloacae isolates from different hospital wards, which persisted over time, confirm the risk of spread of these clones with the transfer of patients to different wards and their long time persistence in hospital settings. 21
All ICU patients at the University Hospital of Split are routinely screened for MDR bacteria on the day of admission, with use of surveillance cultures (rectal, nasal, and oropharyngeal swabs). During the study period, none of the isolated strains from basal surveillance cultures were resistant to carbapenems. Therefore, all cases were considered hospital-acquired. After the emergence of the first two ertapenem-resistant E. cloacae strains, we have implemented a multidisciplinary panel of infection control measures (reinforcement of hand hygiene measures, barrier precautions, and surveillance cultures) to prevent the further spread of the resistant clone. Among all patients who were admitted to the ICU during the study period, only one patient was colonized with an MBL-producing isolate after 21 days of hospitalization (case 5), without developing clinical infection.
The source of this monoclonal outbreak was not identified. The patient-to-patient cross-transmission via healthcare workers, overcrowding, and understaffing in the ICUs are well-known causes of the dissemination of the resistant clones. These findings highlight the limitation of therapeutic options for the treatment of infections with VIM-1-producing organisms and predict the poor clinical outcome and therapeutic failure.
The emergence of colistin resistance, which has been already documented in Enterobacteriaceae family,1,20 was not observed in our study. Colistin is still considered the most active agent against carbapenem-resistant isolates of E. cloacae in our hospital. In conclusion, awareness, continued surveillance of carbapenem resistance, early detection of MBL-producing pathogens, and strict implementation of a multidisciplinary panel of infection control measures as well as wiser antibiotic policies have to be prioritized to limit their spread in the hospital.
Footnotes
Acknowledgments
A part of this article had been accepted for publication at the 23rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) in Berlin, Germany, on April 27–30, 2013. We thank Dr. Irena Zakarija-Grkovic for editing the article.
Disclosure Statement
No competing financial interests exist.
