Abstract
Background:
Carbapenem-resistant Klebsiella pneumoniae (CRKP) is one of the serious forms of health care-associated infection. Pan-drug resistant (PDR) CRKP infections can cause severe infections. Mortality and treatment costs in the pediatric intensive care unit (PICU) are high. This study aims to share our experience regarding the treatment of oxacillinase (OXA)-48-positive PDR-CRKP infection in our 20-bed tertiary PICU with isolated rooms and 1 nurse for every 2–3 patients.
Methods:
Patient demographic characteristics, underlying diseases, previous infections, source of infection PDR-CRKP, treatment modalities, measures used, and outcomes were recorded.
Findings:
Eleven patients (eight men and three women) were found to have PDR OXA-48-positive CRKP. Because of the simultaneous detection of PDR-CRKP in three patients and the rapid spread of the disease, it was classified as a clinical outbreak, and strict infection control measures were taken. Combination therapy with double carbapenemase (meropenem and imipenem), amikacin, colistin, and tigecycline was used for treatment. The mean duration of treatment and isolation was 15.7 and 65.4 days, respectively. No treatment-related complication was observed, only one patient died, and the mortality rate was 9%.
Conclusions:
This severe clinical outbreak can be successfully treated with effective treatment with combined antibiotics and strict adherence to infection control measures. ClinicalTrial.gov ID: 28/01/2022 - 1/5
Introduction
Broad-spectrum antibiotics are commonly used for life-threatening sepsis, especially in intensive care units and health care facilities. Following the widespread use of these drugs, the incidence of resistant Gram-negative bacterial infections, such as extensive beta-lactamase-positive germs, carbapenem resistance, multidrug resistance, and pan-drug resistance (PDR), has increased in health care centers.1–3 Over the past two decades, this condition has become a major health concern for all health care providers worldwide.
The frequent use of carbapenems increases the use of beta-lactamases. In the 1980s, the Ambler classification divided beta-lactamases into four major groups. In Enterobacteriaceae species, beta-lactamases are divided into three distinct groups: class A, B, and D. Class A includes the most common type called Klebsiella pneumoniae carbapenemase (KPC), class B is metallo-beta-lactamases, the most commonly detected being New Delhi Metallo-beta-lactamase, and class D are oxacillinases (OXA) such as OXA-48, which was first detected in Turkey in 2001. 4
In pediatric intensive care units (PICUs), the increasing use of invasive devices, prolonged length of stay, inadequate or delayed therapy, comorbid conditions, and severity of illness are associated with an increase in infections caused by antimicrobial-resistant pathogens. 5 In the past decade, carbapenem-resistant Enterobacteriaceae (CRE) have become a common problem in hospital-acquired infections and can cause outbreaks in intensive care units.5,6 These strains are usually resistant to other classes of antibiotics and commonly become PDR in the ICU. There are insufficient data in the literature on the treatment of infections caused by PDR Enterobacteriaceae in children. In this study, we report a sudden increase in OXA-48-positive carbapenem-resistant K. pneumoniae (CRKP) infections in our PICU and believe we can contribute to the literature by detailing the treatment methods we use and the measures we take.
Materials and Methods
Study setting, patient population, and design
Our PICU is a 20-bed tertiary care unit in a 260-bed academic Children's Hospital. It is divided into 2 sections with 10 beds each, and there are 4 isolated rooms. A nurse is usually responsible for two, rarely three patients, and for hemodynamically unstable patients receiving complex therapy such as ECMO, the nurse-patient ratio is adjusted to 1:1. Each physician is responsible for 2 patients, and the intensive care specialists and their instructors follow each patient regularly.
On average, 60 patients 28 days to 18 years of age are seen monthly. The outbreak of OXA-48-positive PDR-CRKP was retrospectively evaluated over 8 months. The following variables were collected for the study: sex, age, underlying diseases, presence of comorbidities, indication for admission to the PICU, length of stay, antibiotic use, invasive and surgical procedures, source of infection, measures taken (Table 1), and outcomes (colonization, bed occupancy, antibiotic use, mortality, etc.). Diagnosis of infection and isolation of PDR-CRKP was based on the Centers for Disease Control and Prevention criteria. 5
Preventive and Control Bundles
PICU, pediatric intensive care unit.
A clinical case was defined as patients with symptoms of infection such as fever, tachycardia, respiratory distress, or sepsis during follow-up in the PICU and microbiologically confirmed to be OXA-48-positive pan-drug resistance carbapenem-resistant Klebsiella pneumonia infection (PDR-CRKP) in any culture obtained (tracheal aspirate, blood, urine, wound, and stool). The outbreak was defined as a sudden increase in the number of OXA-48-positive-PDR-CRKP infection cases in the PICU population. The study used treatment protocols officially established by the Infection Control Committee. The local ethics committee approved the study. Written informed consent was obtained from the patient's parents.
Microbiological evaluation
Samples were collected from all patients included in the study at multiple sites. Blood, urine, wound, skin, and stool cultures were collected in the microbiology laboratory of the university hospital and for detailed identification in the main microbiology laboratory in the academic campus. Blood cultures were filled into pediatric bottles and incubated for 5 days in the Bactec FX automated blood culture system (Becton Dickinson, USA). Tracheal aspirates from the patients were quantitatively inoculated onto 5% sheep blood agar (Oxoid, England), eosin methylene blue agar (Oxoid), and Sabouraud dextrose agar (Becton Dickinson, USA), and chocolate agar (Oxoid) plates. Urine and wound swab samples were inoculated onto sheep blood agar and eosin methylene blue agar bi plates.
Identification and antimicrobial susceptibility testing were performed using conventional and automated systems (Phoenix 100™ System; Becton Dickinson, USA DCC). Antimicrobial susceptibility testing of K. pneumoniae isolates was also performed and interpreted according to EUCAST criteria. 5 The Kirby-Bauer disk diffusion method was performed using Bioanalysis AST disks (Bioanalysis, Turkey), and the minimum inhibitory concentrations (MICs) of carbapenems were determined using gradient strips (bioMérieux, France), and colistin susceptibility was determined using the broth microdilution method.7,8
All strains were subjected to phenotypic and genotypic screening for carbapenemase production. Phenotypic identification of carbapenemase production was performed using the combination disk method (Mastdiscscombi; Mastdiagnostics, United Kingdom). DNA was extracted using the DNeasy Blood and Tissue Kit (Qiagen, USA) according to the manufacturer's instructions. The presence of 11 carbapenemase genes (blaIMP, blaVIM, blaSPM, blaKPC, blandM, blaOXA-48, blaGIM, blaSIM, blaAIM, blaDIM, and blaBIC) was determined by performing three consecutive multiplex PCR reactions according to the protocol of Poirel et al. 9
Preventive bundle protocol
When the infection was detected, all patients were isolated, and the PICU was divided into two zones, infected and uninfected areas. A separate medical team worked in the infected area. All the measures mentioned in Table 1 were strictly enforced by the team. It was recommended by the infection control committee not to admit patients from outside until the outbreak was completely eradicated. However, still, a limited number of patients were admitted to the uninfected area during the isolation period.
Antibiotic treatment protocol
We administered combined antibiotic therapy to all patients who were found to be infected. In patients with severe comorbidities such as septic shock, immunodeficiency, and multiple organ dysfunction, double carbapenem combination (DCC) infusion therapy (meropenem and imipenem) was administered. In the treatment of DCC, meropenem was administered 120 mg/[kg·day] three times daily and imipenem was administered 100 mg/[kg·day] four times daily. Each meropenem dose was infused for 4 hours, and imipenem for 3 hours, consecutively. Thus, patients were treated with carbapenem for 24 hours.
Amikacin and colistin were administered to all infected patients. Tigecycline was administered at a dose of 1 mg/[kg·dose] every 12 hours in patients younger than 11 years and 50 mg/dose every 12 hours in patients older than 12 years. Tigecycline was not used in patients younger than two years of age, except in one patient with immunodeficiency. Colistin and amikacin were administered at 5 and 15 mg/[kg·day], respectively, divided into two doses. The patients were followed closely for acute kidney injury. All doses of antibiotics were adjusted according to creatinine clearance. The estimated glomerular filtration rate (eGFR) was calculated daily using the Schwartz formula, and the daily dose of each nephrotoxic antibiotic was updated according to the eGFR grade. 10
Results
During the study period, 11 patients were found to have PDR-CRKP. Seven of these patients had severe infections, while the other four patients were asymptomatic. Initially, seven patients (six male and one female) were consecutively found to have PDR-CRKP. Their average age was 6 years. The average time between the patient's admission to the PICU and the onset of infection was 45 days. Two patients had ventilator-associated pneumonia (VAP), two had central line-associated bloodstream infection (CLABSI), two had surgical site infections, and one had catheter-associated urinary tract infection (CAUTI). All cases from PDR-CRKP were only moderately sensitive to tigecycline, and all were OXA-48 positive. At the time of infection onset, 17 patients were in the intensive care unit. Infection occurred almost simultaneously in three patients, and seven patients became infected within 1 week.
After seven patients became infected during the first week, OXA-48-positive PDR-CRKP was detected in the stool cultures of four patients. PDR-CRKP was detected in the urine culture of two of these patients and the tracheal aspirate cultures of the other two. These four patients were determined by the Infectious Disease Committee to have no active infection. They had been previously treated with broad-spectrum antibiotics for various infections and had been in the PICU for an average of 26 days. They were isolated only and received no treatment for the infection. All infected patients were isolated, and the PICU staff strictly followed the rules recommended by the Infection Control Committee. PDR-CRKP was not detected in cultures taken from PICU staff and surfaces during the study.
Extended-spectrum beta-lactamase CRKP was detected in all isolates. All showed intermediate resistance to tigecycline (MIC = 2 mg/L), whereas all were resistant to ampicillin, cefazolin, aztreonam, cefepime, piperacillin-tazobactam, colistin (MIC = 8 mg/L), levofloxacin, fosfomycin, ertapenem (MIC = 32 mg/L), imipenem (MIC = 32 mg/L), and meropenem (MIC = 32 mg/L). The blaOXA-48 gene was detected in all isolates.
Demographic data, clinical conditions, and treatments of the seven patients in whom clinical onset first occurred are shown in Table 2. These patients had refractory fevers and an increase in acute-phase reactants. Four patients had septic shock (patients 1, 2, 3, and 4), and three patients had sepsis (patients 5, 6, and 7).
Patient's Demographic Data, Clinical Features, and Infection Sources
F, female; M, male; CAUTI, catheter-associated urinary tract infection; CLABSI, central line-associated bloodstream infection; CLD, chronic lung disease; CMP, cardiomyopathy; CRKP, carbapenem-resistant Klebsiella pneumoniae; CVC, central venous catheter; HUS, hemolytic uremic syndrome; ICC, intracranial catheter; MSUD, maple syrup urine disease; PDR-CRKP, pan-drug resistant carbapenem-resistant Klebsiella pneumoniae; PICU, pediatric intensive care unit; SAH, subarachnoid hemorrhage; SAM, sulbactam-ampicillin; SCID, severe combined immune deficiency; TBI, traumatic brain injury; VAP, ventilator-associated pneumonia.
We administered combined antibiotic therapy to patients who had severe infections. DCC infusion therapy (meropenem and imipenem) was administered to patients with severe concomitant diseases such as septic shock, immunodeficiency, and multiple organ dysfunction syndrome. In the study, four patients received DCC, and all seven patients received combined antibiotic therapy. No complication related to combined antibiotic therapy occurred during or after treatment. Only in patient 2, sensorineural hearing loss was observed, but the patient's neurological condition was not good before the treatment initiation, we do not know whether this condition was related to the treatment. Only one patient died, and this occurred without documented infection after 21 days of treatment and 87 days of isolation. The mean duration of treatment and isolation was 15.7 and 65.4 days, respectively.
In Figure 1, the detection times of PDR-CRKP infection, treatment times, and isolation times after the onset of the outbreak are shown in each patient individually. The mortality rate of the study was 14.2% when only symptomatic patients were evaluated, whereas the mortality rate was 9% when all cases were included. In addition, only one patient (patient 5) was readmitted to the PICU for urinary tract infection with OXA-48-positive CRKP after discharge. The duration of isolation of the PDR-CRKP outbreak, treatment methods, and survival of seven patients are summarized in Table 3. Isolation lasted 153 days (patient 2). Colonization of the skin and gastrointestinal tract was observed in all infected patients, whereas no colonization was observed in uninfected patients who were in the PICU at the same time.

The detection times of PDR-CRKP, treatment times, and isolation times after the onset of the outbreak are shown in each patient individually (PICU). PDR-CRKP, pan-drug resistant carbapenem-resistant Klebsiella pneumonia infection; PICU, pediatric intensive care units.
The Antibiotics Used for Pan-Drug Resistant Carbapenem-Resistant Klebsiella pneumoniae, Isolation Times, and Outcome
DCC, double carbapenem combination.
Discussion
A PDR-CRKP infection is a serious form of nosocomial infection in intensive care units. The mortality rate of CRKP infections is reported to be ∼50% in adults. 11 In one meta-analysis, the mortality rate of CRE infections was 26–44%; in another study, the mortality rate of OXA-48-positive CRKP infections was 58.3%.12,13 There are insufficient data in the literature on the mortality of PDR-CRKP in children, and our mortality rate is significantly lower than in other adult studies.
When drug-resistant infection is detected in intensive care units, it is important to take infection control measures to prevent the spread of infection. Because PDR-CRKP was detected in three patients and spread rapidly in our PICU, we considered it a clinical outbreak and took all prevention and control measures. We formed a separate health care team to treat the infected area. Our PICU environment was physically suitable for this separation process, and it was our advantage that the number of physicians and nurses working in the clinic was sufficient. PDR-CRKP was not determined by the staff or environmental cultures.
In this clinical outbreak of OXA-48-positive infection, CRKP was detected in the initial cases as septic shock. All of these patients had severe underlying diseases, several different invasive procedures, surgeries, and long hospital stays. All the above risk factors are consistent with previous studies. 14 Most patients were treated with a broad spectrum of antibiotics before the onset of the disease. While previous antibiotic use has been reported in the literature to be an independent risk factor for CRKP, some studies have specifically defined carbapenem use as a risk factor for CRKP.9,13–15 Our patients were treated with meropenem before CRKP, but because of the small number of cases in our study, no association between the use of meropenem and CRKP can be established.
Our goal was to eliminate the infection in the PICU by providing adequate antibiotic support in the initial phase. Therefore, we used a wide range of combined antibiotic therapies because our patients were critically ill, had severe underlying diseases, and stayed longer in the PICU. In patients who had severe infections, we used combined antibiotic therapy. The literature indicates that appropriate treatment is the only variable that independently predicts survival. 11 The use of combined antibiotics has been shown to reduce mortality, but there is no clear information on which antibiotic combinations should be used.11,16–18 Ceftazidime-avibactam is a successful treatment for PDR-CRKP infections.19,20 Unfortunately, we could not use ceftazidime-avibactam during the study period because there was no drug available in our country and foreign approval was required.
OXA-48 CRKP exhibits varying degrees of carbapenem resistance, possibly due to differences in gene expression. 21 Carbapenems do not reduce mortality and may even be harmful because of their side effects, and they can be used when the in vitro MIC is in the range of 4–8 mg/dL.22,23 Combination treatments of carbapenems are associated with lower mortality when MIC levels are high. 24 DCC has been used as a combination of meropenem and ertapenem for CRKP infections, and successful results have been obtained.25,26 Although the rationale for this combination has not been studied in detail, it is believed that one of the carbapenem compounds deflects the carbapenemase enzyme, which acts as a self-moderating inhibitor, allowing and maintaining the activity of the other carbapenem.27,28
A meta-analysis of 22 studies describing CRE infections found a significantly higher risk of all-cause mortality in patients treated with monotherapy (odds ratio, 2.19; 95% confidence interval 1.00–4.80), with large heterogeneity (I 2 = 84.2%; QP = 0.003). 29 In some studies in adults, double- or triple-combination therapies with colistin, tigecycline, aminoglycosides, and carbapenems have been used to treat CRKP infections, and mortality rates have been reported to range from 23.6% to 32.5%.24,30 The mortality rate of combination therapy with tigecycline, colistin, and meropenem was reported to be 12.5%, and successful results were shown with the addition of tigecycline to combination therapy.18,31 In our study, we used colistin and tigecycline together with DCC. We used this treatment on four patients because they were in septic shock. We used colistin to increase the intracellular activity of DCC, 25 and we obtained good results using imipenem instead of ertapenem.
The main limitation of the study is the small sample size, the absence of ceftazidime-avibactam in our country during the study period, and the fact that no molecular genotyping of OXA-48 PDR-CRKP was performed during the study period. Pulsed-field gel electrophoresis could not be performed. From a microbiological point of view, we cannot speak of an outbreak, but we accepted this situation as a clinical outbreak because it occurs as a severe infection in three patients simultaneously and then spreads rapidly to other patients.
Conclusions
PDR-CRKP can cause serious infectious diseases such as CLABSI, VAP, CAUTI, and surgical wound infections in PICUs. If an infected or colonized patient is discovered, isolation and infection control measures should be implemented immediately. PICU architecture and design (presence of isolated rooms) and adequate health care workers are important factors in reducing the spread of outbreaks. Successful treatment outcomes can be achieved with appropriate treatment, good follow-up, and full adherence to infection control measures. Experience in children is very limited, and further studies with this approach are needed to demonstrate treatment efficacy. Our study has had successful results with a small group of patients. Treatment of this severe infection should be planned according to the patient's clinical condition. Combined antibiotic therapy can be used in patients who have severe infections, and stay in PICU.
Footnotes
Acknowledgments
In this research report, all individuals who contributed to this article are listed as authors. We would like to thank everyone who contributed to this study as mentioned above.
Authors' Contributions
M.H. and T.K.: review and editing (equal) and writing—original draft (lead). Ö.T.P.: writing—original draft (supporting). S.Ö., A.Y., and T.E.: conceptualization (supporting). Z.C.K., H.G., and D.Ö.: contributed to microbiological diagnosis, genetic evaluation, and writing material and method part. H.Ö. and E.Ç.: contributed to infection control, treatment plans, data evaluation, and execution. E.İ.: methodology (lead); writing—review and editing (equal); and conceptualization (lead). All authors approved the final version of the article.
Disclosure Statement
No competing financial interests exist.
Funding Information
No funding was received for this article.
