Abstract
This study analyzed factors associated with mortality in Klebsiella pneumoniae bacteremia, particularly the role of combination therapy. Medical records of 109 patients (2012–2018) were reviewed to assess risk factors for carbapenem-resistant K. pneumoniae (CRKP) bacteremia. The total 30-day mortality was 41.3%. Excess mortality was calculated for the following groups: multidrug-resistant (MDR) K. pneumoniae, CRKP, and carbapenem-susceptible K. pneumoniae. Of 109 isolates, 64.2% were CRKP. All patients received empirical therapy; 20.2% received monotherapy, while the remainder received combination therapy, which was linked to longer intensive care unit stays and higher primary bacteremia rates. Overall, inappropriate empirical treatment occurred in 62.4% of patients. Both monotherapy (40.9%) and combination therapy (36.8%) groups showed similarly high rates of inappropriate treatment. Hemodialysis catheter use was a risk factor (p = 0.0238). Third- and fourth-generation cephalosporins had the highest mortality (45.9%), whereas MDR strains showed the lowest (4.51%). Although combination therapy alone did not significantly reduce mortality, Kaplan–Meier analysis revealed no survival benefit. However, monotherapy increased mortality, suggesting that combination therapy may still play a role in mitigating outcomes. Carbapenem resistance in K. pneumoniae bacteremia remains alarmingly high and correlates with excess mortality and inappropriate empirical treatment.
Keywords
Introduction
Klebsiella pneumoniae is considered one of the main causes of hospital infections and is mentioned by the World Health Organization as a priority antimicrobial-resistant pathogen that requires new control strategies.1,2 The emergence and global spread of carbapenem-resistant K. pneumoniae (CRKP) have posed a major threat to public health, particularly in low- and middle-income countries such as Brazil, due to the difficulties in treating these infections and the high associated mortality.3–5
In a specific region of Brazil, the estimated incidence rate of carbapenem-resistant K. pneumoniae (CRKP) bacteremia increased from 43.4% to 56.3%.6,7 Furthermore, the reported mortality rate of CRKP has varied widely in most studies, ranging from 53.1% to 83%.8,9 Therefore, accurate diagnosis and management of bloodstream infections (BSIs), along with the application of appropriate antimicrobial therapy, can significantly improve patient survival rates.
It is important to emphasize that surveillance studies should be continuously conducted to better understand the epidemiology of these pathogens at the regional level. In this context, the increasing prevalence of CRKP complicates the empirical treatment of these infections, and health care institutions must adapt prevention and control measures to each region.
Objectives
We aimed to identify the variables associated with mortality in K. pneumoniae bacteremia, with particular attention to the impact of targeted combination therapy.
Methods
Study design and data collection
This retrospective cohort study analyzed Bloodstream Infection (BSI) caused by K. pneumoniae in adult patients admitted to the intensive care unit (ICU) of a teaching referral hospital in Brazil between 2011 and 2019. Data for this study were obtained from the bacteremia registry of the Microbiology Laboratory of the Hospital. Only patients hospitalized in the unit for at least 48 hours before the bacteremia diagnosis were eligible. This study aimed to identify predictors of mortality and to evaluate the clinical consequences of resistance and the impact of inappropriate therapy. The primary outcome was 30-day in-hospital mortality. Information collected from hospital records included demographics and clinical characteristics (illness severity, comorbidities), use of invasive devices, length of total hospital stay, length of ICU stay, and invasive procedures. The medical history of the patient’s underlying conditions, such as heart failure, nephropathy, malignancy, diabetes mellitus, chronic lung disease, and vascular disease, was also included. We also assessed the sources of bacteremia, treatment regimes, and instances of inappropriate antimicrobial treatment.
Identification and antimicrobial susceptibility
Microbial identification and antimicrobial susceptibility testing were performed at the hospital using the Vitek-2 system (bioMérieux, Marcy l’Etoile, France). Antibiotics tested included aminoglycosides (gentamicin, amikacin), carbapenems (imipenem, meropenem), cephalosporins (cefepime), fluoroquinolones (ciprofloxacin), and β-lactamase inhibitors (piperacillin-tazobactam). Susceptibilities were determined according to the standards of the Clinical and Laboratory Standards Institute (CLSI 2011–2019).
Definitions
Bacteremia is defined as the presence of viable microorganisms in the bloodstream, confirmed by a positive blood culture. 10 It is considered acquired in unit care intensive if the infection develops more than 48 hours after hospital admission and there is no clinical evidence of infection at the time of admission. 10 The episodes were classified into three categories according to the causative pathogens: carbapenem-susceptible K. pneumoniae (CSKP), CRKP, and multidrug-resistant (MDR) K. pneumoniae. CRKP, as defined, included all applicable K. pneumoniae with a result of intermediate (I) or resistant (R) to imipenem or meropenem unless otherwise noted. 11
Bacteremia is classified as primary when a recognized pathogen is isolated from one or more blood cultures and is not linked to an infection at another site. Secondary bacteremia occurs when a recognized pathogen isolated from one or more blood cultures is associated with a known focus of infection (pneumonia, urinary tract infection, catheter). 10
MDR is defined based on antibiotic susceptibility testing. To qualify as MDR, the organism must demonstrate nonsusceptibility (I or R) to at least one agent within a given antibiotic class, thereby establishing nonsusceptibility to that entire class. This condition must be met for a minimum of three specified antibiotic classes. 11
Antimicrobial therapy was classified as empirical when initiated before the availability of antimicrobial susceptibility testing results (typically 48–72 hours after blood culture collection) and as definitive once susceptibility data were available. Empirical therapy was deemed appropriate if all the following criteria were satisfied: administration of at least one antimicrobial agent according to clinical guidelines, in vitro susceptibility of the isolated pathogen to the administered agent, and initiation of the first dose within 24 hours of blood culture collection. Inappropriate empirical therapy was assigned for any empirical regimen that failed to meet one or more of the above criteria. 10
Excess mortality is the most frequently chosen measure to estimate deaths attributable to a specific cause. 12
Statistical analysis
Student t test was used to compare continuous variables, and χ2 or Fisher’s exact test was used to compare categorical variables. Survival curves were constructed using the Kaplan–Meier method. The log-rank test was used for comparisons between patients receiving inappropriate and appropriate therapy, different sources of infection, and different therapy groups (monotherapy and combination therapy). All p values were two-tailed, and p ≤ 0.05 was considered statistically significant. Analyses were carried out using the GraphPad Prism software package (La Jolla, CA, USA).
The excess number of deaths associated with BSIs caused by MDR K. pneumoniae, CRKP, and CSKP was then calculated for each group using an equation derived from Bender and Blettner (Equation 1; aOR, adjusted odds ratio; P0, p value).
Results
Of the 109 K. pneumoniae isolates, 64.2% were resistant to carbapenems. All patients received empirical therapy with anti-Gram-negative antibiotics, administered at currently recommended doses, either as monotherapy or in combination. Based on the antimicrobial susceptibility test and the initiation of treatment within 24 hours of diagnosis, empirical therapy was classified as inappropriate in 62.4% of the total patients. Specifically, inappropriate therapy rates were 40.9% for patients receiving monotherapy and 36.8% for those on combination therapy.
The definitive treatment regimen was determined by the responsible physician based on the results of the antimicrobial susceptibility test. Monotherapy was administered to 20.2% of patients. A comparison between patients receiving monotherapy and those receiving combination therapy revealed that the latter group had a longer ICU stay and a higher frequency of primary bacteremia. The 30-day mortality rate was high at 41.3%, with rates of 27.3% in the monotherapy group and 44.8% in the combination therapy group, according to Table 1. Regarding the underlying conditions, most patients presented with at least one, such as heart failure (45.0%), diabetes mellitus (17.4%), and nephropathy (15.6%). Primary bacteremia and lung infection were the most frequent sources of infection (51.4% and 33.0%, respectively).
Characteristics of Patients with Bacteremia Due to Klebsiella pneumoniae Receiving Monotherapy or Combination Therapy
Three patients without therapy are included in this group, and one death occurred within this subgroup.
bStudent t test.
cMann–Whitney test.
dFisher’s exact test.
ICU, intensive care unit; IQR, interquartile range; SD, standard deviation.
The association between different treatment regimens and crude 30-day mortality is shown in Table 2. Mortality was particularly notable in patients treated with third- and fourth-generation cephalosporins in monotherapy, with a rate of 28.6% for those receiving carbapenems. Combination therapy, on its own, was not associated with a reduction in mortality, with rates exceeding 45.6%.
Outcome of Patients with Bacteremia Due to Klebsiella pneumoniae according to Treatment Regimen
The bold values are used to differentiate between the three comparison groups: monotherapy, no therapy, and combination therapy. Because the monotherapy and combination therapy groups have sub groups.
The main characteristics of the survivor and nonsurvivor subgroups are presented in Table 3. Univariate analysis identified the use of a hemodialysis catheter as the main risk factor (p = 0.0238). Compared with survivors, nonsurvivors were older, more frequently admitted to the ICU, more likely to have comorbidities, more commonly had primary bacteremia, and less frequently had urinary tract infection as the source of infection. They also less frequently received the appropriate antibiotic therapy within 24 hours of infection onset.
Univariate Analysis of Variables Associated with 30-Day Mortality in Patients with Bacteremia Due to Klebsiella pneumoniae
There are three patients without therapy in this group.
CI, confidence interval; MDR, multidrug resistance; OR, odds ratio.
The Kaplan–Meier curves for targeted treatment with monotherapy or with combination therapy are presented in Figure 1A, which shows that combination therapy by itself was not associated with decreased mortality. Mortality is higher in the monotherapy group for infections caused by MDR K. pneumoniae (Fig. 1B). The Kaplan–Meier curves for targeted treatment with monotherapy or combination therapy in patients with and without appropriate empirical therapy are presented in Figure 1C, which depicts that patients receiving appropriate therapy had lower mortality than those receiving inappropriate antibiotic therapy.

Kaplan–Meier curves for the survival of patients with bacteremia caused by Klebsiella pneumoniae:
The lowest attributable mortality was found in patients with MDR K. pneumoniae (4.51%), while the highest was found in those with CRKP (12.95%) (Fig. 2).

Study timeline of patient events, concerning hospital admission, exposures, and outcomes. CRKP, carbapenem-resistant Klebsiella pneumoniae; CSKP, carbapenem-sensitive K. pneumoniae.
Discussion
Our study emphasizes the correlation between the CRKP and CSKP infections and patient outcomes in BSI, providing important insights into both monotherapy and combination therapy for these infections. Over the past 10 years, several observational studies and meta-analyses have highlighted higher mortality in patients with CRKP BSI compared with those with CSKP BSI.3,5,9,13
The increasing prevalence of severe CRKP infections, with high mortality rates, highlights the urgent need for effective treatments and is a significant health care concern, especially in low- and middle-income countries such as Brazil. The literature supports this finding, highlighting the high prevalence of this phenotype in Brazilian hospitals, with rates ranging from 63% to 96%.6,14,15
The overall mortality in our patient cohort was high (42.2%), similar to rates observed in other studies,5,6,8,9 likely reflecting the severity of patients with BSI. Survival analysis revealed that 62.2% of deaths occurred within 30 days of KP-BSI onset, and these patients had received inappropriate empirical therapy.
In our cohort, timely and appropriate antibiotic therapy was possibly associated with a reduced mortality risk. The interval between the onset of BSI and the initiation of appropriate antibiotic treatment has been linked to better outcomes in patients with CRKP infections.2,10,12 It is worth noting that while we assessed the impact of inappropriate antimicrobial therapy, we did not investigate the effects of specific antibiotic regimens on patient outcomes. Thus, further studies are needed to explore the outcomes of patients receiving different empirical antibiotics with demonstrated in vitro activity.
In this way, the 30-day crude mortality rate among patients with CRKP BSI was 45.9%, a figure similar to those reported in other countries and considerably higher than the 33.3% observed in patients with CSKP.9,16 In addition, we estimated the attributable mortality for three types of K. pneumoniae isolates (MDR K. pneumoniae, CRKP, and CSKP) in a group of patients with bacteremia. Attributable mortality ranged from 12.95% in CRKP patients to an unexpected −10.43% in those with CSKP bacteremia, suggesting that treatment is more efficient in these infections.
Despite the absence of robust multivariate modeling, the strong signal from our univariate analysis remains crucial. It clearly identifies the group CRKP as a critical, high-risk factor for early mortality and directly reflects the grim reality of daily clinical practice in our high-resistance setting. In this real-world context, the clinical decision to employ combination therapy is typically reserved for patients with the highest comorbidity burden and most severe presentations, precisely to mitigate the risk of death. 17 The lack of statistical significance for combination therapy is thus largely a function of the selection bias (target treatment) and a reflection that patients’ outcomes are ultimately highly dependent on the complex interplay between the extreme virulence of K. pneumoniae and the individual’s physiological response to the severe infection and the subsequent rigorous treatment regimen.
Our study was conducted in Brazil, a country with a high incidence of CRKP. Regional data on CRKP are of great importance as they provide valuable information about these strains, allowing for a deeper understanding of the regional impact of these infections.4,5,9 Thus, our data may reflect what occurs in countries with similar characteristics, but they cannot be generalized to countries with a low prevalence of resistant K. pneumoniae. However, the Brazilian experience is crucial for other countries to understand the impact of this phenotype on mortality and clinical practice.
Although no direct impact on mortality was observed in some specific analyses, the presence of antibiotic-resistant pathogens increases the disease burden by replacing their antibiotic-susceptible counterparts and raising the overall number of infections. These infections can increase mortality in critically ill patients with comorbidities and generate additional costs due to prolonged health care exposure and the use of expensive antimicrobials, which may further select for antimicrobial-resistant pathogens. Therefore, early recognition and the implementation of effective control measures are essential to minimize the impact and mortality risk associated with CRKP BSI.
Conclusion
Bacteremia caused by CRKP is clearly associated with high mortality rates, including excess mortality, representing a significant threat to critically ill patients. Although the direct impact of inappropriate empirical therapy on mortality was not statistically significant (p = 0.1058), it was associated with a higher early death rate compared with patients who received appropriate treatment.
Authors’ Contributions
C.P.R. and E.R.d.A.-J. drafted the article and conducted molecular and data analysis. V.L.D. isolated and provided the strains with routine phenotypical data. R.M.R. provided essential supervision, validation, review, and editing.
Footnotes
Acknowledgments
The authors thank the management of the participating hospital for the consent and collaboration, as well as the staff members for their contributions to this study.
Ethical Statement
The study was approved by the Research Ethics Committee of the Federal University of Uberlandia, Minas Gerais, and ethical approval was granted under protocol number 239/11. Verbal and written consent were obtained from each hospital representative and from all individual participants in the study. At all stages of the study, the principles of confidentiality and nonmaleficence were applied, and the identities of hospitals and patients were kept confidential.
Disclosure Statement
No competing financial interests exist.
Funding Information
This work was supported by public agencies dedicated to the promotion of scientific and technological research: Minas Gerais State Agency for Research and Development (FAPEMIG), Decit/SECTICS/MS—CNPq, CAPES.
