Abstract
Keywords
Introduction
Guanidinoacetate methyltransferase (GAMT) deficiency is a rare inherited disorder defined as one of the creatine deficiency syndromes (CDS) which was recently discovered and includes three inborn errors of creatine synthesis and transporter, 1 with the first case to be reported by Stockler et al. in 1994. 2 The biosynthesis of creatine in the liver and the pancreas requires the presence of two essential enzymes, arginine: glycine aminotransferase (AGAT), guanidinoacetate methyltransferase (GAMT), and creatine transporter (CRTR). 3 With GAMT deficiency, there will be decrease or even diminished of creatine level 4 and patients presenting with elevated concentrations of guanidino-acetate (GAA). 5 A reduction in GAA is important as its accumulation can lead to brain toxicity. 6 This has been found in molecular interactions between GAA and GABAA (γ-aminobutyric acid type A) receptors in murine brain studies which has been also proposed as the potential mechanism explaining the neurological phenotypes in GAMT deficiency. 7 Such reduction is important by utilizing a strategy of arginine restriction that is a substrate for GAA synthesis. GAMT deficiency is attributed to various forms of mutations in the gene encoding chromosome 19p13.3. 3 Consanguineous marriages play a major role as a risk factor that has been found in many reported cases.8–10 A higher prevalence of this disorder is predicated among communities of higher consanguinity rates including a country like Saudi Arabia. 11 Furthermore, the clinical presentation is variable from mild to severe intellectual disability,3,9 with non-specific findings including the presence of speech delay, hypotonia, seizure, autistic behavior, and extrapyramidal features are also reported.4,9,12 One of the latest studies in 2023 reviewed 4 novel case reports in Saudi Arabia and over 50 published case reports all over the world, showing that intellectual disability followed by seizures are the most frequently reported presentation. 9 Moreover, the diagnosis of this disorder is made by correlating clinical and biochemical findings. Molecular gene testing is then done to confirm the diagnosis of GAMT deficiency. 1 However, although the literature on diagnosing GAMT deficiency is slowly increasing, we still lack validated data on the management of this disorder, and until today; there are no published guidelines for the management of CDDs. 1 Treatment of GAMT deficiency aims to replenish creatinine levels of the brain using creatinine monohydrate.13,14 In addition, an arginine-restricted diet and sodium benzoate reduce GAA levels, and high doses of L-ornithine supplementation competitively inhibit AGAT activity. 15 Biochemical, imaging, and clinical monitoring with treatment should be done to monitor the efficacy of treatment. However, a study determined that the initiation of treatment early on has been highly beneficial in reducing cognitive and intellectual disabilities and other clinical symptoms that will affect the development of the child. 3 They were followed up and showed normal development. This prompts the importance of newborn screening among patients to help avoid long-term complications relating to under and misdiagnosed patients.15,16 As there is no published consensus for the management of GAMT deficiency, our study aims to collect and analyze treatment methods and outcomes of patients diagnosed with GAMT deficiency in Saudi Arabia compared to others previously reported in the literature.
Materials and Methods
Ethical Approval
The study’s aim, protocol, and procedure were approved on May 2, 2023, by the Unit of Biomedical Ethics Research Committee at the Faculty of Medicine at King Abdulaziz University (number 245-23). The study was conducted under the guiding principles of the World Medical Association Declaration of Helsinki. Patients personal data were masked and consent was obtained prior to the enrollment of the local cases. All information was kept private and anonymous.
Sample Collection
Following appropriate ethical and logistical measures, we obtained the genetic sample of the patients from King Abdulaziz University Hospital. Whole exome sequencing (WES) was carried out on the four patients to detect the pathogenic variants. Sequencing was performed on Double-stranded DNA capture baits against approximately 36.5 Mb of the human coding exome (targeting >98% of the coding RefSeq from the human genome build GRCh37/hg19) were used to enrich target regions from fragmented genomic DNA with the Twist Human Core Exome Plus kit. The generated library was sequenced on an Illumina platform to obtain at least 20-fold coverage depth for >98% of the targeted bases. An in-house bioinformatics pipeline, including read alignment to GRCh37/hg19 genome assembly, variant calling (single nucleotide and small deletion/insertion variants), annotation, and comprehensive variant filtering were applied. Primary data analysis was performed using Illumina bcl2fastq converter v2.19. Secondary analysis is performed using Illumina DRAGEN Bio-IT Platform v.3.4.12. Tertiary data analysis is performed using SnpEff v5.0 and PerkinElmer's internal ODIN v.1.01 software. CNV and absence of heterozygosity are assessed using BioDiscovery's NxClinical v5.1 software.
Study Design and Setting
Following the Narrative Review Checklist developed, 17 we conducted an analytical exploratory study in which we reviewed published case reports on January 2023 for cases with GAMT deficiency. A total of 52 studies were retrieved from the literature. The literature search included the following study designs: A) case reports B) case series C) review articles. The time period was set from 1996 to January 2023. The following terms were used to identify literature: GAMT, Guanidinoacetate Methyltransferase, and Deficiency. The exploited databases include MEDLINE/PubMed. The following data were obtained: age, gender, genetic mutation, age of disease onset, reporting country, family history, clinical profile, management plans, and diagnostic and laboratory workup. No restrictions on ages were made and patients of all ages were included in the study. After synthesizing the obtained cases, only 45 studies were either in accordance with the scope of the study or obtained clinical significance. The findings of these cases were compared to four novel cases for patients from our clinic.
Statistical Analysis
Microsoft Excel 2014 (Microsoft Corp., Redmond, WA, USA) served as a spreadsheet tool to conduct the data assembly and entry. Statistical analysis was made using the Statistical Package for the Social Science (SPSS) version 26 (IBM Corp., Armonk, NY) and SmartPLS. Variables were exclusively qualitative in nature. Qualitative variables were described in frequency tables with percentages. All data utilized graphical presentation in the form of line charts and illustrated graphs. Clinical symptoms were stratified according to gender (male, and female), age groups (0-1 years: infants; 2-4 years: toddlers; 5-12 years: children), and reporting region (Europe, Asia, or North America).
Results
In this study, we reviewed the pharmacological, dietary, and electrophysiological information and clinical outcomes of 44 literature cases of patients with confirmed pathogenic variants in the GAMT gene. Additionally, we presented 4 cases that have been previously described in the literature by the same authors (Table 1). 9 However, in the previous description only the clinical data were presented and now the novel therapeutic details are presented. The pathogenic variant in the novel cases was detected using WES. In total, this study included 48 patients).14,16–42 The mean current age of patients was 117 months (±29.03) (range 12-372 months). The mean age of disease onset was 28.32 months (±13.68) (range 8 days – 252 months). A summary of the current age and age of disease onset was illustrated in Figure 1 in accordance with the report of each published case. The gender distribution showed a slight male predominance of 27 male patients to 21 female patients. The most prevalent clinical symptoms were developmental delay, which was predominately in speech and motor, seizures of various forms, and intellectual disability. The prevalence of these symptoms was 28%, 22%, and 13.6%, respectively. Other symptoms and their respective percentages are summarized in Figure 2. Patients were grouped according to their age groups. It included infants (0-1 year), toddlers (2-4 years), children (5-12 years), and others (>12 years). Their age distribution was summarized according to their gender in Figure 3. Turkey and the United States had the most reported cases (n = 6 each). Followed by Germany and Italy (n = 5 each). Other countries included Saudi Arabia, Austria, Ireland, the United Kingdom, Bulgari, Portugal, The Netherlands, China, Iran, Lebanon, Iraq, and Canada.

Line chart comparing the current age of patients and the age of disease onset. The Y-axis represents ages in months. The X-axis represents articles in a chronological order.

Pie chart of the most common clinical manifestations of the reported cases.

Bar chart of patients’ current ages according to each pediatric age group with their gender characteristics. X-axis represents the number of patients. The Y-axis represents each age group.

Metabolic pathway showing the biosynthesis of creatinine in the kidney and liver from the amino acids arginine and glycine.
Pharmacological and Electrographical Characteristics of the Four Reported Cases. the Dose Range Indicated the Starting Dose and Maximumly Reached Dose.
In our case presentation, the male-to-female ratio was 3:1. Although various treatment modalities were used among the patients, in total, we detected 54 different pharmacological interventions reported within the cases. Sodium valproate/valproic acid was the most frequently reported medication in 12 patients. Other medications included risperidone, aripiprazole, baclofen, phenobarbital, levetiracetam, lamotrigine, primidone, and others. A single report combined the management plan with ACTH for two patients. The clinical data for dietary intervention was available among 32 cases in the literature. The most commonly used dietary intervention was creatinine monohydrate at multiple doses that ranged from 200–400 mg/kg/day followed by l-ornithine supplementation, a low-protein diet, sodium phenylbutyrate, arginine hydrochloride, and, essential amino acid supplements. Meanwhile, 12 literature cases did not mention any dietary intervention. Nine cases reported mono-therapy, the majority of these mono-therapy were creatinine supplements. Six cases reported dual therapy that included a combination of creatinine supplement and arginine hydrochloride, creatinine monohydrate and restricted protein diet, creatinine monohydrate, and l-Ornithine. There were 16 reported cases that included treatment modalities of more than 3 different types of treatment. This includes a combination of creatinine monohydrate, protein-restricted diet, and l-ornithine supplement. In some cases, the same triple therapy was used with the substitution of arginine arginine-restricted diet for the protein-restrictive diet. Other combinations and doses were highlighted in Table 2 according to the availability of such information by the original authors.
Pharmacological and Electrographical Characteristics of the Literature Cases. the Dose Range Indicated the Starting Dose and Maximumly Reached Dose.
Overall, 25 patients reported to have some form of clinical or neuroradiological improvement. Of those, 12 patients were reported to be seizure-free or controlled after the treatment. Five patients were reported to demonstrate improved motor functions. Two patients had specific speech improvement and enhanced verbal abilities. However, in some patients (case 38), hypotonia and rigidity progressed and worsened. Lack of speech improvement was reported in 5 patients. These worsening clinical symptoms were a combination of lack of seizure control, lack of cognitive improvement, the continuation of developmental delay, and persistent worrying signs on magnetic resonance imaging (MRI), magnetic resonance spectroscopy (MRS), and electroencephalogram (EEG) in some cases as summarized in Table 2.
Twenty-six patients performed EEG. The majority had abnormal findings. This includes multifocal spike and slow-wave discharges mostly in the frontal region, dysrhythmic background, and rare periods of generalized suppression in some patients. Normal EEG was reported among 2 patients. Twenty-one patients had abnormal MRIs compared to 15 patients with normal MRIs. Reduced creatinine peak was noted among 20 patients that ranged from complete absence to moderately reduced creatinine flow. This reduction was repeatedly reported mostly in the basal ganglia and peritrigonal white matter. Atrophy was also reported in the cerebellar and supratentorial regions. Toxicometabolic changes were also reported in the globus pallidi, pons, central tegmental tract with reticular formation. T2 hyperintense signal abnormalities were seen in 8 patients.
Case Studies
Case 1
The proband is an 8-year-old boy with a homozygous missense pathogenic variant in the GAMT gene (NM_138924.2:c.160G > C p.[Ala54Pro]) diagnosed using WES. He first presented with disease onset at the age of 2 years. As for the child's clinical presentation, he had an initially normal gain of milestone, However later in life, he presented with speech delay, intellectual disability, learning disability, and seizures. Upon assessing the patient physically, he had an unsteady gait, normal power, tone, and reflexes in the four limbs. Laboratory investigation included a fragile-x gene test and MRI of the brain. Both tests were normal. Regarding the child's seizure semiology, it was polymorphic, tonic spasms, generalized tonic-clonic seizures, and myoclonic seizures. His seizure remained interactable in which five ASMs failed but started to be controlled especially after undergoing vagal nerve stimulation (50% seizure reduction). Currently, the patient is on valproic acid, 250 mg twice per day (30 mg/kg/day) with slow weaning schedule. His last EEG showed a slow background for age and a slow spike and waves suggestive of Lennox-Gastaut syndrome. As for replacement therapy, he was on creatinine monohydrate capsules. Six capsules twice a day of 7.5g was administered. He was also on 12 ornithine capsules (0.5 g each). His daily dosage of creatinine and ornithine started on 400 mg/kg/day and reached a maximum of 800 mg/kg/day with no remarkable changes were observed in his seizure activity after administrating and augmenting the diet. The patient's parents are consanguineous and the other two siblings are healthy. No similar family history was reported. He continues to follow up with the pediatric neurology team.
Case 2
The proband is a 6-year-old boy with a homozygous pathogenic variant in the GAMT gene (NM_000156.6:c.160G > C [p.Ala54Pro]) found on WES. Speech delay was the first symptom he presented by the age of 2 years, with restriction in language development. Also, the family noticed regression on his skill along with symptoms of hyperactivity attention deficit hyperactivity disorder (ADHD), and intellectual disability. There was positive consanguinity with a positive family history of seizures. The patient had intractable seizures in different forms including tonic seizures and head drops, his seizure was labeled as Lennox-Gastuat syndrome, not responding to multiple ASMs including valproic acid, clobazam, levetiracetam, topiramate, rufinamide, and perampanel. With time, his ability to walk was affected by his seizures. His neurological examination was normal, and no dysmorphic features were apparent on inspection. The patient underwent an MRI which came back normal, however, his EEGs showed slow spikes and waves and generalized paroxysmal fast activities. After diagnosis was reached by genetic testing, he started on creatinine (maximum dose reached is 450 mg) and ornithine he dramatically responded to it in the form of improving his language restriction and interaction, with time he became seizure-free and weaned off his antiepileptic medication.
Case 3
The third proband is a 10-year-old girl with a homozygous pathogenic variant in the GAMT gene (exon6:x.577c > T:pQ193X) found on WES. Our patient was suffering from speech delay started to be noticed by the age of 2 years, with global development delay and cognitive impairment. Her seizures started by the age of 4 years with myoclonic and tonic seizures and abnormal EEG findings. MRI, however, was not significant for any abnormality. She started her therapy with 3 ASMs, which was able to wean to only one medication after reaching the diagnosis, and started on creatinine 400 mg/kg/day and reached 800 mg/kg/day. She was also on 12 ornithine capsules (0.5 g each) and showed no remarkable changes in his seizure pattern after starting this diet.
Case 4
The fourth proband was presented at the age of 4 years old and now he is 14 years old. At the time of presentation, he was noticed to have speech delay, with symptoms of hyperactivity, and intractable seizure in the form of tonic seizures that was not responding to 3 ASMs. Genetic testing was performed and he was found to have a homozygous GAMT gene for a sequence variant designated c.406C > T which is predicted to result in an amino acid substitution (p.Thr136Met). Improvement was achieved after he was started on creatinine (started on 350 mg/kg/day and reached a maximum of 450 mg/kg/day) which made a difference in his seizure frequency from once a week to once in month.
Discussion
In this study, we investigated the management efficacy and outcome of cases diagnosed with GAMT deficiency among forty-eight patients in different age groups worldwide. GAMT deficiency is a rare disorder first described in 1994 2 and it is part of the cerebral creatinine deficiency syndromes. The mutation in the gene leads to an error in the methylation of guanidinoacetate that converts it into creatinine in the creatinine synthesis pathway Figure 4.46,47 In our review we found that developmental delay represents the highest percentage (28%) of all clinical presentations, therefore the importance of early detection of the disease and early management play essential roles in the development and cognitive function of the child. In the study by Viau et al., 48 the authors presented a patient who was early detected and diagnosed at the age of 8 days with a positive family history of GAMT deficiency and initiated early intervention resulting in normal development function without loss or delay in millstones. The patient treated at birth remains developmentally normal. 48 In fact, the majority of patients carrying such mutation manifest with severe phenotype of early onset with a symptom-free prodrome in infancy in which early detection is essential to prevent future impairment in development. 21 In such scenarios or in limited resources sittings, biochemical findings including absent or significantly decreased creatinine peak in the brain is highly associated with GAMT deficiency.49,50 This can be observed in multiple reported patients (Table 2). Such findings are echoed by another reported case of a sibling with the affected disease diagnosed prenatally with mutation analysis resulting in initiating the treatment antenatally by providing creatinine supplement to the mother up to 28 weeks of gestational age, continuously providing care and treatment to the neonate from after birth resulted in normal development in cognitive functions, motor functions, and speech abilities. 51 Moreover, various treatment modalities were used among our patients (n = 48) including pharmacological and dietary. However, a quarter of them did not report the type of treatment administered to their patients. The majority of remaining cases (n = 32) received dietary supplements with different modalities either monotherapy (creatinine supplement), dual therapy (creatinine and arginine hydrochloride or creatinine monohydrate and protein-restricted diet or creatinine monohydrate and 1-ornithine) or triple therapy (creatinine monohydrate, 1-ornithine, and protein-restricted diet\arginine restricted diet. Meanwhile, valproic acid was a common medication that showed variable efficacy in nearly half of patients. Others, however, received different medications including phenobarbital, levetiracetam, lamotrigine, primidone, baclofen, risperidone, aripiprazole, and ACTH. Overall, 69% of patients showed clinical improvement. Furthermore, the majority of cases become seizure-free or controlled after the treatment, 20% showed better motor function, 8% had speech improvement and enhanced verbal abilities, and 4% showed clinical worsening and regression (hypotonia, progressing in rigidity, lack of seizure control, lack of cognitive improvement and continuation of developmental regression), and in 20% did not show any speech improvement.
Conclusion
This study concluded several promising treatment modalities and combinations for patients with GAMT deficiency. The systematic analysis of reported cases revealed the importance of adequate and well-mannered pharmacological and dietary intervention towards such patients. Presymptomatic detection has shown a synergetic effect on the health of patients when combined with proper treatment modalities. Such modalities had high variation and showed that personalized management plans can potentially lead to a successful disease course. However, many cases remain refractory to treatments due to the complexity of the clinical background and comorbidities. For that, it is important to further understand the condition and emphasize the need for early detection, screening, and intervention.
Limitations of This Study
The study was limited by the un-systematic approach adopted by each author and subjectively reporting the clinical outcomes. Specifically there were no standardized symptom reporting or standardized treatment in the reported cases. Additionally there was not a standardized age at which various diagnostic testing was done. Future studies should investigate using standardized terms and parameters and includes a large cohort similarly to this study which included every reported case.
Footnotes
Acknowledgment
Authors would like to express their highest gratitude for Dr. Abdullah Aldail from King Saud Medical City for his profound assistance in data acquisition and arrangement.
Declaration of Conflicting Interests
The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
Funding
The author(s) received no financial support for the research, authorship, and/or publication of this article
