Abstract
BACKGROUND:
Previous studies revealed that DEP domain containing 1 (DEPDC1) is involved in the carcinogenesis and progression of several types of human cancer. However the role of DEPDC1 in gastric cancer has not been studied.
OBJECTIVE:
The objective of this study was to study the expression and pathophysiological function of DEPDC1 in gastric cancer.
METHODS:
DEPDC1 expression in gastric adenocarcinoma cells was examined with Western blot and qRT-PCR. Clinical pathological features of patients were determined by immunohistochemistry. The effect of DEPDC1 expression on cell proliferation was studied by in vitro cell proliferation assay; and cell cycle influence was assessed by flow cytometry. Survival curves were plotted using Kaplan-Meier.
RESULTS:
DEPDC1 was overexpressed in gastric adenocarcinoma tissues compared with the paired adjacent normal gastric tissues, in accordance with mRNA level downloaded from GEPIA database. DEPDC1 expression level was significantly associated with cancer metastasis and differentiation. DEPDC1 upregulation caused cell cycle accelerating from G1 to S phase, and it was correlated with poorer overall survival.
CONCLUSION:
Therefore, DEPDC1 upregulation in gastric adenocarcinoma is associated with tumor development and poor clinical outcomes of the patients, implying DEPDC1 might be a potential therapeutic target against gastric cancer.
Introduction
Gastric cancer is one of the most common and leading causes of cancer death worldwide [1]. It is a complex and aggressive disease in which the five-year survival rates in the advanced stages of the disease are only 5–30% [2]. The incidence of gastric cancer in East Asia is even higher than the other parts of the world. The disease is difficult to manage, especially when diagnosed at advanced stages, which is reflected in high rates of local recurrence after surgical resection [3]. Gastric carcinogenesis is a multi-step process [4]. Understanding the mechanisms associated with local invasion and distant metastasis is critical in early diagnosis and managing prognosis of the disease.
DEP domain containing 1 (DEPDC1) as a highly conserved protein, was first found to be aberrantly upregulated in bladder cancer not many years ago [5, 6]. The protein which originally plays an important role in bladder cancer cell growth, has now been confirmed presenting in other types of cancers, including multiple myeloma [7], breast cancer [8], hepatocellular carcinoma [9], lung cancer [10], colorectal cancer [11], nasopharyngeal carcinoma [12] and glioblastoma [13]. Knockdown of DEPDC1 inhibits growth of human bladder cancer and myeloma cell lines, and its upregulation is associated with shortened patients’ survival [5, 7]. The DEPDC1-294 epitope peptide vaccine has also been used in bladder cancer [14]. DEPDC1 is located on chromosome 1p31.2 spanning an approximately 23 kb genomic region. The main function of protein-containing DEP domains include cell membrane anchoring, signal transduction, cell polarity establishment, and regulation of small GTP enzyme activity [13].
Despite DEPDC1 contains a highly conserved DEP domain, its pathophysiologic roles in growth of human cancer cells have not been investigated. The objective of this study was to investigate the pathophysiological roles of DEPDC1 in gastric cancer. Our previous work have indicated that DEPDC1 is highly expressed in gastric cancer cells compare to its normal adjacent tissues, and cell proliferation assay showed cells interfered with DEPDC1 siRNA had decreased rate of cell proliferation. We therefore carried out cell functional tests to verify the function of DEPDC1 in gastric carcinogenesis, by interfering or overexpressing DEPDC1 in gastric cancer cell lines. In this study, the expression and function of DEPDC1 in gastric cancer cells will be thoroughly studied, which hopefully provide novel theoretical basis for the prognosis and treatment of gastric cancer.
Materials and methods
Cell culture and sample collection
Gastric adenocarcinoma cell lines AGS and MGC803 were obtained from China Centre for Type Culture Collection (Shanghai, China). These two wild-type cancer cell lines were routinely cultured in Gibco DMEM (ThermoFisher Scientific, MA, USA) and RPMI-1640 (Life Technologies Corporation, USA) supplemented with 10% foetal calf serum (FCS; PAA Laboratories, Somerset, UK), penicillin and streptomycin (Sigma-Aldrich Inc, Poole, Dorset, UK), in an incubator at 37.0C, 5% CO
Plasmids and transfection
DEPDC1-flag and control vector plasmids were purchased from GeneChem (Shanghai, China). The siRNAs against DEPDC1 and control siRNA were synthesized by Shanghai GeneChem (Shanghai, China). 1
RNA extraction and RT-PCR
Total RNA was extracted from AGS and MGC803 cells with Trizol (Tianwei, Beijing, China) following the manufacturer’s protocols. cDNAs were synthesized using the TransScript First-Strand cDNA Synthesis SuperMix (Transgen Biotech, Beijing, China). PCR amplifications were performed using Ex Taq hot start version (Takara Bio Inc., Otsu, Japan) following the manufacturer’s instructions. Primers were designed using Primer Premier 5 (San Francisco, CA, USA). Primers were as follow: DEPDC1 forward GAAGCAGTGGATTGGCTTTATG, reverse TCTGGATACCTTCGTGGTAGA;
Western blot analysis
The cells were washed three times with cold PBS, harvested using cell lysis buffer (RIPA) and cell scrapes, and quantified with BCA methods. Equal amounts of protein extracts (50
Immunohistochemical staining of DEPDC1 in gastric specimens
Specimens were collected from patients who opted for surgical resection of gastric tumor at Yantai Yuhuangding hospital (Yantai, China) from April 2015 to December 2016. 50 pairs gastric adenocarcinoma and adjacent normal tissues were sectioned at a thickness of 3
Cell proliferation screening
Cells were inoculated in the 96-well and cultured (37
Flow cytometry assay
Cell cycle distribution was determined by flow cytometry after staining cells with propidium iodide (PI). In brief, floating and adherent cells were collected by trypsin digestion and low speed centrifugation, washed twice with ice-cold phosphate-buffered saline (PBS), and fixed with 70% ethanol. The cells were then treated with 50 lg/ml of RNase A and 50 lg/ml of propidium iodide for 30 min at room temperature before analyzed using a MoFlo XDP flow cytometer (Beckman Coulter, CA, USA). For apoptosis analysis, cells were stained with Annexin V-FITC and PI using the Annexin V-FITC Apoptosis Detection Kit (Sigma, Saint Louis, USA), and then subjected to FACS analysis.
The Expression of DEPDC1 is upregulated in gastric adenocarcinoma. (A) The transcript level of DEPDC1 compared between gastric adenocarcinoma (
The mRNA expression profiles of gastric adenocarcinoma were downloaded from GEPIA (Gene Expression Profiling Interactive Analysis), which is a newly developed interactive web server for analyzing the RNA sequencing expression data of 9,736 tumors and 8,587 normal samples from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) projects, using a standard processing pipeline (
DEPDC1 was significantly upregulated in immunohistochemical staining of gastric cancer tissues. (A) Representitive images of DEPDC1 expression in gastric cancer tissues and paracancerous tissues. Expression of DEPDC1 protein in surgically resected gastric cancer tissues (of two distinct patients) by immunohistochemical staining using anti-DEPDC1 polyclonal antibody demonstrates expression of DEPDC1 protein (
Data are presented as the mean
Results
Relationship between the mRNA levels of DEPDC1 and the clinicopathological parameters of patients with gastric adenocarcinoma
The expression of DEPDC1 mRNA level compared between gastric adenocarcinoma and normal gastric tissues was calculated using the GEPIA dataset (Gene Expression Profiling Interactive Analysis) (
To detect the expression of DEPDC1 in gastric adenocarcinoma patients, mRNA level in 40 pairs of gastric adenocarcinoma tissues and adjacent normal gastric tissues were analyzed by quantitative real-time PCR. Results show DEPDC1 mRNA was significantly up-regulated in 31 cases (77.5%) compared with adjacent normal gastric tissues (
Upregulated DEPDC1 is associated with advanced tumor differentiation and lymph node metastasis
To further validate the protein levels of DEPDC1 in gastric cancer, we examined the DEPDC1 expression level in gastric cancer tissues which were collected from Yantai Yuhuangding Hospital using immunohistochemistry. Immunostaining for DEPDC1 was performed in 50 pairs of paraffin-embedded tissue specimens from patients with gastric cancer in order to determine DEPDC1 expression patterns in gastric cancer tumors in comparison with adjacent normal gastric cells. Strong positive staining for DEPDC1 was frequently observed in tumor specimens, while negative to moderately positive staining was observed in tumor-adjacent paracancerous cells (Fig. 2). Of the 50 pairs of specimens enrolled for this analysis, 74% (37 out of 50) of gastric cancer tissues were positive for DEPDC1 staining and for those taken from the tumor adjacent Section 30% (15 out of 50) were positive (Fig. 2 and Table 1). The expression of DEPDC1 was significantly increased in gastric cancer tissue (
Quantitative immunohistochemistry analysis of DEPDC1 expression in 50 gastric cancer tissues and its adjacent tissue
Quantitative immunohistochemistry analysis of DEPDC1 expression in 50 gastric cancer tissues and its adjacent tissue
Clinical pathological feature of gastric cancer subjects and expression status of DEPDC1
To ensure the efficiency of gene interference and overexpression, three RNA interference targets against DEPDC1 were designed and all three groups of plasmid were mixed equally for lentiviral packaging in AGS cells. The fluorescent signal of target cells expression after transfection were scanned and counted, and proliferation curves were plotted. The results showed that the proliferation of cells in the control group (shCtrl) was normal, and the proliferation multiplied by 9.2 times on the fifth day compared with the first day (Fig. 3A); the fold change of shCtrl was regarded as 1. The proliferation of PC group (positive control group of proliferation inhibition) was significantly slowed down, and the proliferation only multipled by 0.63 times on the fifth day compared with the first day, and the fold change of shPC was 14.52. Compared with the shCtrl, DEPDC1 knockdown inhibited AGS cell proliferation by 2.02 times, which was demonstrated by the weakened fluorescent labeling on day 5 (Fig. 3A). The proliferation of MGC803 cells of the DEPDC1-exp group was multiplied by 21.6 times on the fifth day compared with the first day. DEPDC1 knockdown in AGS cells exhibited decreased cell proliferation compared with the control cells, while increased proliferation was seen in MGC803 cells where DEPDC1 was overexpressed (
Growth-inhibitory effects of DEPDC1 siRNAs on cell proliferation. (A) Signals of fluorescent protein were weakened after transfection by day 5 demonstrating proliferating role of DEPDC1 in AGS. (B) DEPDC1 knockdown inhibited AGS cell proliferation. (C) DEPDC1 overexpression increased MGC803 cell proliferation (
To investigate the potential role of DEPDC1 in cell cycle progression, we next studied the cell cycle distribution at 24 h after DEPDC1 overexpression using flow cytometry. As shown in Fig. 4C, DEPDC1 significantly increased the portion of S phase in DEPDC1-overexpressing MGC803 cell lines. For MGC803 cell line, proportion of cells fixed at G0/G1 phase and S phase were 44.15%
DEPDC1 overexpression promotes cell cycle progression in gastric adenocarcinoma cell line. Flow cytometric analysis of DEPDC1 overexpressed MGC803 cells (A) and DEPDC1 interfered AGS cells (B). 
To further evaluate the association of DEPDC1 mRNA expression level with the survival time of patients with gastric adenocarcinoma, survival analysis was performed using data obtained from TCGA data set. Survival plot showed that high DEPDC1 mRNA level was significantly associated with poorer overall survival (OS,
Discussion
Studies have revealed that DEPDC1 was aberrantly elevated in diverse human cancers, and most of them have proven it acted as a putative oncogene and potential therapeutic target in a variety of cancers [7, 8, 9, 10, 11, 12]. However, less is known about the biological functions and clinical significance of DEPDC1 in gastric cancer. In the present study, high expression of DEPDC1 was found in gastric cancer tissues. We report that DEPDC1 is overexpressed in majority of gastric cancer samples relative to non-tumor tissues. siRNA mediated DEPDC1 depletion leads to decrease in gastric cell line viability, and its overexpression is associated with cell cycle propulsion in two gastric cancer cell lines. The expression of DEPDC1 was significantly associated with tumor metastasis and differentiation, and high DEPDC1 level was obviously correlated with poor clinical outcome. These results indicated that DEPDC1 upregulation was associated with oncogenesis and poor clinical outcomes of the patients with gastric cancer.
Currently, functional analysis on the implication of DEPDC1 in cancer development has been conducted in a number of cancers including bladder cancer, hepatocellular carcinoma, lung cancer, colorectal cancer, nasopharyngeal carcinoma, glioblastoma and prostate cancer etc. [5, 9, 10, 11, 12, 13, 17]. In our study, knockdown of DEPDC1 expression by siRNA resulted in significant growth suppression in two gastric cancer cell lines. This is consistent with some other studies, for instance a study showed that DEPDC1 suppresses apoptosis to promote cell proliferation through the NF-
GEPIA is an interactive web server for analyzing the RNA sequencing expression data of 9,736 tumors and 8,587 normal samples from the TCGA and the GTEx projects [14]. By analyzing the transcriptional profiles of DEPDC1 in GEPIA, results showed that DEPDC1 mRNA and protein expression levels were dramatically enhanced in gastric adenocarcinoma tissues (Fig. 1A and B). As confirmed in the lab, DEPDC1 was highly expressed in gastric cancer group compared with non-cancer group. Our results showed elevated DEPDC1 expression was significantly associated with shorter survival time of gastric cancer patients (Fig. 4C and D) according to data downloaded from TCGA database. The TCGA database carries massive cancer-causing genomic information to create a comprehensive atlas of cancer genomic profiles, and help investigators improve diagnostic methods, treatment standards, prevention precautions [20].
DEPDC1 overexpression drives G1 to S phase cell cycle transition in the MGC803 gastric cancer cells lines (Fig. 4A), while knockdown of DEPDC1 showed the opposite effect (Fig. 4B). The hyper-proliferation effect caused by DEPDC1 dysregulation is one of the most representitive phenotypes in gastric cancer. Previously reported data form our lab also demonstrated that DEPDC1 overexpression improved the growth, migration, invasion ability, and drove G1 to S phase cell cycle transition in breast cancer cells, and the deletion of DEPDC1 suppressed these malignant phenotypes [21]. Silencing of DEPDC1 resulted in significant reduction of proliferation, migration, invasion, and delay in cell cycle progression in nasopharyngeal carcinoma [12]. Moreover, DEPDC1 also promotes cell proliferation and tumor growth via activation of E2F signaling in prostate cancer [22]. Future study will focus on locating the protein within the complex cellular networks, so the role of DEPDC1 in cancer initiation and progression can be revealed.
In summary, the present study showed that DEPDC1 was up-regulated in gastric cancer tissues and associated with tumor development and poorer clinical outcomes of patients with gastric cancer. These results demonstrate a critical role for DEPDC1 in regulating the growth of gastric cancer cells, and provide novel thought to improve current understanding of the pathogenesis of gastric cancer.
Footnotes
Funding
This work was supported by China International Medical Foundation (Z20140615325), and Yantai Science and Technology Program (2018SFGY098).
