Abstract
BACKGROUND:
Inhibin A, a member of TGF-
OBJECTIVE:
We aimed at identification of an optimized protocol for expression and recovery of inhibin
METHODS:
Two vectors, four different E.coli strains, and six solubilization conditions for were used for the optimization of inhibin
RESULTS:
The results showed that inhibin
CONCLUSION:
The current protocol is an efficient method for protocol for expression and recovery of inhibin
Keywords
Introduction
Inhibins are heterodimeric glycoproteins that are composed of a common 18 kDa
Inhibins are principally synthesized in the sertoli and granulosa cells and mainly play a regulatory role in the synthesis and secretion of FSH and glucocorticoids [4, 5]. Inhibins participate in erythropoiesis, liver proliferation, immune function, bone formation, skin morphogenesis and cutaneous wound repair [2].
The serum level of Inhibin, used as a diagnostic marker for different physiological conditions like ovarian cancer [6, 7, 8], male and female fertility [9], Down syndrome prenatal screening, polycystic ovary syndrome, and premature ovarian failure [10, 11, 12], is measured by monoclonal antibody-based methods such as the immunosensor assay (ELISA) enzyme [13, 14]. For producing monoclonal antibody against inhibin and other experimental works, protein is needed. As inhibin is only found at very low concentrations in most accessible fluids, such as blood serum, isolation is difficult. Therefore, the production of recombinant inhibin in a simple, fast and high-efficiency system would be useful. However, due to the hydrophobic properties of inhibin, a disulfide bond in its structure and several cysteine residues, and its overexpression in prokaryotic cells formed inclusion bodies. Recovery of soluble protein from inclusion bodies need inclusion bodies isolation from the E.coli lysate, solubilization and then refolding steps. We describe here a cost-effective, simple, and efficient approach for producing soluble inhibin
Material and methods
Construct preparation, digestion and sequencing
The mature hINHA (residues 233–366) coding sequence (402 bp) was obtained from NCBI accession number NM_002192.2. After codon optimization, it was synthesized and inserted into BamHI/HindIII restriction sites of the pET22b vector by GENEray (China). After transformation of pET22b
E. coli strains and culture conditions for expression of the human inhibin
subunit
E. coli strains and culture conditions for expression of the human inhibin
Composion of buffers used for inclusion body isolation and solubilization
The constructs were transformed into four E.coli strains namely BL21 (DE3), Shuffle T7 (DE3), Rosetta (DE3), and Origami
Inclusion body isolation and solubilization
To optimize the purification of the protein from Inclusion Bodies (IBs), various solubilization buffers were checked. After cell culturing and harvesting, lysis buffer II (50 mM Tris-HCl, 5 mM EDTA, 1 mM PMSF, pH8.5) was used for lysis and sonicated as mentioned above. The cell lysate was centrifuged at 20,000 g for 20 min at 4
Protein purification by His-tag affinity chromatography
For protein purification, hINHA was expressed using the pET22b vector in Shuffle T7 (DE3) strain. As pre-culture, Shuffle T7 (DE3) was grown in 5 ml TB medium for 16 h at 37
Agarose gel analysis for double digestion of pET22b and pColdI vector using BamHI and HindIII. A. Lane 1, 1 kb marker; lane 2, double digested pET22b. B. Lane 1, 500 bp marker; lane 2, double digested pColdI.
All fractions originated from protein purification include flow-through, wash, wash plus imidazole, elution and a non-induced sample prepared in Leammli buffer and run on 13% SDS-PAGE under reducing condition. Proteins were transferred to PVDF (polyvinylidene difluoride) membrane. After blocking with 2.5% BSA in 0.05 PBS-T for overnight at 4
Protein refolding by dilution
A commonly tried but episodically successful protocol to rescue insoluble protein is to denature the protein and try to refold it in vitro. Even the most robust protocols only refold a small fraction of the input protein, and it is difficult to purify the refolded fraction. The hINHA was purified under denaturing conditions, concentrated by amicon, loaded into a 5 ml syringe. This syringe was fitted into a pump with the tip placed inside 95 mL of the refolding buffer (50 mM Tris-HCl, 150 mM NaCl, 1.5 M urea, 10% v/v glycerol, 0.1 M arginine, 3 mM reduced glutathione, 0.3 mM oxidized glutathione, pH8.5). Following gentle stirring for 24 h at 8
Results
Construct preparation, digestion and sequencing
After digestion of pET22b
A. SDS-PAGE analysis of the pET22b-hINHA Expression in different E.coli strains. Lanes 1 and 2: insoluble (IS) and soluble (S) fraction of INHA expression in Rosetta (DE3); Lanes 3 and 4: IS and S fraction of INHA expression in Origami
The encoding sequence of mature hINHA was cloned into pET22b and pColdI vectors. The constructs were transformed into several E.coli strains, including BL21 (DE3), Shuffle T7 (DE3), Rosetta (DE3), and Origami
Inclusion body isolation and solubilization
Overexpression of hINHA in E.coli led to the formation of protein aggregation commonly called as inclusion bodies (Fig. 2). In order to obtain biologically active and soluble protein in high yield, inclusion bodies must then be solubilized and refolded in vitro. For isolation and purification of inclusion bodies, after cell lysis and centrifugation, the pellet was washed 2 times with buffer containing detergents 2% Triton X-100 to remove contaminants (Fig. 3). The washed inclusion bodies were suspended and incubated in various buffers to find the best condition. The results indicated that the highest level of soluble protein was present in buffer C containing Urea 2 M at alkali pH (Fig. 4).
SDS-PAGE analysis of hINHA inclusion bodies purification from Shuffle T7(DE3). Lane1, uninduced cells; lane 2, induced cells; lane 3, inclusion bodies after cell lysis; lanes 4 to 6, inclusion body after washing steps.
SDS-PAGE (A, B & C) and Western blot (D) analysis of solubilized IBs in different buffers. A. Soluble (S) and insoluble (I) fraction of buffer A; S and I fraction of buffer B; B. S and I fraction of buffer C; S and I of buffer D; C. S and I fraction of buffer E; S and I fraction of buffer F; D. Soluble fractions of buffer A, B, C, D, E, and F. M, protein molecular weight marker.
Purification of hINHA. A. SDS-PAGE analysis of Purification fractions obtained from Ni-NTA chromatography. Lane 1, uninduced cells; lane 2, induced cells; lane 3, purified IBs; lane 4, IBs solubilized supernatant of buffer c; lane 5, flow through; lane 6, wash; lane 7, wash plus imidazol 10 mM; lane M, protein molecular weight markers; lanes 7–10, elution fractions. B. Western blot analysis of the hINHA protein contained in various fractions collected from Ni-NTA affinity column. Lane 1, uninduced cells; lane 2, induced cells; lane 3, purified IBs, lane 4, IBs solubilized supernatant, laneM, protein molecular weight markers; lanes 5 and 6, washes; lane 7, elution.
After suspension of inclusion bodies in buffer C, centrifugation was done and the solubilized supernatant was loaded on Ni-NTA Column. The hINHA was eluted in column by elution buffer. The fractions were collected and run on SDS-PAGE. The elution fractions analysis on SDS-PAGE showed suitable purity of the purification step (Fig. 5A). Moreover, the results demonstrated an intense band corresponding to the estimated molecular weight of hINHA, as detected by Western blot using commercial anti-His-tag antibody (Fig. 5B).
Non-reducing and reducing SDS-PAGE analysis of refolded hINHA protein. Lane 1, uninduced cells; lane M, protein molecular weight markers; lanes 2 and 3, refolded hINHA in non-reducing condition; lane 4, refolded hINHA in reducing condition.
Elution buffer containing protein was concentrated by the Amicon Ultra 10 kDa molecular weight cut-off centrifugal tubes (Millipore, Bedford, MA, USA) and refolded by adding to refolding buffer via syringe pumps with 1 ml/min rate. The protein refolding was confirmed with non-reduced (without 2-ME, disulfide-reduced) and reduced (with 2-ME, disulfide-bonded) SDS–PAGE (Fig. 6). In both conditions, only one band was seen in about 19 kDa but in non-reduced SDS-PAGE condition, refolded hINHA appeared upper that implied the proper refolding.
Discussion
Due to its diagnostic application and other research targets, a large-scale production of recombinant inhibin A in a low cost, high speed, and high yield expression system like E.coli is needed. The purpose of this study was to establish and optimize the expression, purification, and refolding procedure for hINHA using different E.coli strains. In mature inhibin A, alpha subunit has 134 residues containing 10 cysteine residues with 3 intrachain disulfide bonds, and beta subunit has 116 residues containing 9 cysteine residues with 4 intrachain disulfide bonds [3, 16]. Expression of a cysteine-rich protein like inhibin A in the prokaryotic system is challenging since reducing environment of cytoplasm does not let disulfide bond formation [17, 18].
To solve this problem, we applied two strategies. First, we produed the protein in the periplasmic space of bacteria. Problems for heterologous protein expression in the periplasmic space are incomplete translocation across the inner membrane, proteolytic degradation, and insufficient capacity of the export machinery [19]. In addition, protein expression in periplasm space needs N-terminal signal sequence. The production of proteins that carry a signal sequence is, for yet poorly understood reasons, often toxic to the cell [20]. In the current study, we tried to express pET22b-INHA encoding pelB signal sequence in the periplasm of BL21 (DE3) strains. The results indicated that the yield of expression in periplasmic space was low (data are not shown) and the cytosolic expression fraction, as we expected, was insoluble.
Another strategy for expression of a cysteine-rich protein uses host strains with oxidative cytoplasm that provide conditions with the proper formation of disulfide bonds [15, 21]. Therefore, we tried to express hINHA in two different E.coli strains including Origami (DE3) and Shuffle T7 (DE3). These strains have mutations in both the thioredoxin reductase (trxB) and glutathione reductase (gor) genes, which greatly enhance disulfide bond formation in the cytoplasm [15]. Shuffle host strains have a copy of the disulfide bond isomerase DsbC gene which helps in proper formation of disulfide band [22]. In addition, hINHA expression was checked in the Rosetta strain. The most important feature of Rosetta strains is the presence of specific tRNAs for rare codons in E.coli to enhance the expression of eukaryotic proteins [23]. The results showed that a high protein expression level of hINHA occurred in the Shuffle T7 (DE3) strain but most of the protein expressed as inclusion bodies.
Over-expression of a heterologous protein in hosts like E.coli leads to the formation of insoluble aggregates. Indeed, inclusion bodies are the pure expressed protein with native-like secondary structure, interacted by ionic and hydrophobic forces, without biological activity [24]. Forming inclusion bodies is a common challenge during recombinant protein production where it occurs in 70% of cases [25]. Several parameters including induction temperature, promoter strength of vectors, inducer concentration, culture media pH, non-oxidative state of cytoplasm, lack of chaperones and post-translational modifications in prokaryotic expression system had the impact on the formation of IBs [15, 26, 27, 28]. The culture temperature after the IPTG induction was set at low temperature by using pCold vectors. Also, the pH of culture media was regulated by potassium phosphate buffer in TB media.
For protein recovery from the IBs, after IBs isolation, they were dissolved by denaturing solubilization processes using solution containing high concentration of chaotropes (such as 8 M urea and 6 M guanidine hydrochloride routinely used for IBs solubilization) and mild solubilization processes using 2 M urea in the presence of several reagents such as organic solvent, detergents, reducing agents, and alkaline pH [15, 27, 29, 30].
The mechanism of action of high concentrated Urea and Gnd.Hcl for IBs solubilization breaks hydrogen bonds and denaturing native-like secondary structure of inclusion bodies completely [31]. Mild solubilization buffers containing different reagent destabilize hydrophob interaction, reduces disulfide bonds, and disruptes ionic interactions. Therefore, native-like secondary structure of IBs approximately remains intact, leading to reduce protein aggregation during refolding step and increases recovery yield of bioactive protein [15, 32]. In the current study, we applied both methods and found that 2 M urea at high pH is suitable for higher solubilization of INHA inclusion bodies.
Solubilized INHA was filtered and passed through a Ni-NTA column for purification. For refolding, we checked on-column and dilution refolding. We observed that on-column refolding is not applicable method but refolding by dilution is a proper strategy. In the refolding phase, we used L-arginine as an aggregation suppressor to enhance folding yield. Arginine prevents aggregation of partially folded intermediates [33]. Glycerol as a protein stabilizer, enhances hydrophobic interactions between protein and solvent, so it increases folding yied. To help the protein refolding, disulfide bonds were first reduced by adding DTT to the solubilization buffer. The mature hINHA, having 10 cysteine residues and three intramolecular disulfide bonds, has a high potential for the formation of non-native, inter- and intra-chain disulfide bonds during inclusion body formation. We included reduced and oxidized glutathione in the refolding buffer for generation of the correct disulfide bond. Non-reducing SDS-PAGE showed that refolding by this dilution buffer is a proper method to produce folded hINHA.
In conclusion, in the current study, we introduced an efficient method for solubilizing and refolding hINHA.
Footnotes
Acknowledgments
This work was supported by grant number 93-04-87-27089 from Tehran University of Medical Science.
Conflict of interest
None.
