Abstract
Background:
The roles of amyloid-β and tau in the degenerative process of Alzheimer’s disease (AD) remain uncertain. [18F]AV-45 and [18F]AV-1451 PET quantify amyloid-β and tau pathology, respectively, while diffusion tractography enables detection of their microstructural consequences.
Objective:
Examine the impact of amyloid-β and tau pathology on the structural connectome and cognition, in mild cognitive impairment (MCI) and AD.
Methods:
Combined [18F]AV-45 and [18F]AV-1451 PET, diffusion tractography, and cognitive assessment in 28 controls, 32 MCI, and 26 AD patients.
Results:
Hippocampal connectivity was reduced to the thalami, right lateral orbitofrontal, and right amygdala in MCI; alongside the insula, posterior cingulate, right entorhinal, and numerous cortical regions in AD (all p < 0.05). Hippocampal strength inversely correlated with [18F]AV-1451 SUVr in MCI (r = –0.55, p = 0.049) and AD (r = –0.57, p = 0.046), while reductions in hippocampal connectivity to ipsilateral brain regions correlated with increased [18F]AV-45 SUVr in those same regions in MCI (r = –0.33, p = 0.003) and AD (r = –0.31, p = 0.006). Cognitive scores correlated with connectivity of the right temporal pole in MCI (r = –0.60, p = 0.035) and left hippocampus in AD (r = 0.69, p = 0.024). Clinical Dementia Rating Scale scores correlated with [18F]AV-1451 SUVr in multiple areas reflecting Braak stages I-IV, including the right (r = 0.65, p = 0.004) entorhinal cortex in MCI; and Braak stages III-VI, including the right (r = 0.062, p = 0.009) parahippocampal gyrus in AD.
Conclusion:
Reductions in hippocampal connectivity predominate in the AD connectome, correlating with hippocampal tau in MCI and AD, and with amyloid-β in the target regions of those connections. Cognitive scores correlate with microstructural changes and reflect the accumulation of tau pathology.
Keywords
INTRODUCTION
The accumulation of amyloid-β plaques and neurofibrillary tangles of hyperphosphorylated tau are the pathological hallmarks of AD; however, the exact role of these proteins in the neurodegenerative process remains unclear [1, 2]. The amyloid hypothesis proposes that amyloid-β deposition, present over 20 years before symptom onset, is the primary driver for AD [2–4]. The hypothesis is supported by the early and progressive appearance of amyloid-β plaques, the pathogenic role of amyloid-β in multiple other human diseases, and genetic variants of AD characterized by increased amyloid-β production [5–12]. However, the spatial distribution of amyloid-β pathology is different from that of neurodegeneration in AD, while the extent of amyloid-β deposition poorly predicts clinical disease, and drug therapies targeting amyloid-β have been largely ineffective in human trials [2, 13–16]. These inconsistencies have cast doubt on the amyloid hypothesis [16].
Tau pathology, also present over 10 years prior to the clinical onset of AD, arises in the transentorhinal cortex before spreading to limbic and subsequently neocortical areas as AD progresses [1, 17]. This progression, elegantly described by Braak and colleagues (2006), corresponds with areas of degeneration and with clinical disease stage while in vitro studies demonstrate neuronal dysfunction and degeneration due to tau toxicity [1, 18–21].
Positron emission tomography (PET) imaging allows the in vivo visualization of amyloid-β and tau pathology. [18F]AV-45 (Florbetapir), [11C]PiB (C-Pittsburgh compound B), and [18F]AV-1 (Florbetaben) have all been validated for visualization of amyloid-β deposition while the development of [18F]AV-1451 (Flortaucipir) has enabled the visualization of the paired helical filaments formed from hyperphosphorylated tau in AD [3, 22–25]. These tracers are sensitive enough to demonstrate tau and amyloid-β deposition in preclinical AD while their distribution is consistent with histological studies [26–33].
Mild cognitive impairment (MCI), an interim state between that of normal aging and dementia, provides an opportunity to examine the structural and molecular changes which occur prior to the development of AD. Patient’s with MCI have an annual conversion rate to AD of 5–10%. However, MCI represents a heterogeneous clinical group; most patients do not progress to AD after 10 years follow up, while many MCI patients will develop other forms of dementia or recover entirely [34]. Despite these limitations, MCI patients provide an enriched population, in whom a significant proportion will harbor the pathological and structural underpinnings of impending AD. Identifying these changes will not only allow us to better understand the pathological process, but also to identify those who can benefit most from novel therapies.
Diffusion weighted imaging (DWI) allows microstructural changes underlying AD and MCI to be examined in vivo. Diffusion tractography utilizes DWI to delineate white matter pathways, allowing alterations in structural connectivity between brain areas to be detected. Decreased structural connectivity has been demonstrated in the temporal lobes of patients with pre-clinical AD, with further involvement of the parietal and occipital lobes in MCI, and subsequently throughout the brain in AD [35–39], while alterations in network topology are detectable up to 13 years before symptom onset in those with familial AD. The use of graph theory measures to examine network topology is emerging as a sensitive marker of neurodegeneration; however, the biological significance of these early topological changes remains uncertain [40–44].
Combining these imaging modalities enables detailed examination of the pathological changes which underly AD. A number of studies have demonstrated associations between tau PET changes and DWI white matter abnormalities [45–48], while microstructural changes within hippocampal connections have been shown to predict downstream tau accumulation only in amyloid positive individuals [49]. However, these studies often focus on specific tracts and regions, which may miss larger scale or unexpected effects, while the demonstrated effects of amyloid-β upon the neurodegenerative process have so far been unrelated to its regional distribution within the brain [38, 51].
By combining [18F]AV-1451 and [18F]AV-45 PET with DTI in healthy controls, MCI, and AD, we aimed to examine the microstructural consequences of amyloid-β and tau pathology, and assess those changes which precede the clinical onset of AD. Examination of microstructural and cognitive changes in relation to the distribution of tau and amyloid-β pathology, both by region and according to the Braak and Thal pathological staging systems, allows scrutiny of different phases in a sequential disease process.
MATERIALS AND METHODS
Data used in the preparation of this article were obtained from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database (http://adni.loni.usc.edu) accessed in June 2019. The ADNI was launched in 2003 as a public-private partnership, led by Principal Investigator Michael W. Weiner, MD. The primary goal of ADNI has been to test whether serial MRI, PET, other biological markers, and clinical and neuropsychological assessment can be combined to measure the progression of MCI and early AD. The detailed methodology for all clinical and imaging data acquisition are available at the ADNI website (http://adni.loni.usc.edu/methods/).
Participants
A total of 86 subjects from the ADNI database were included in the study (Table 1), comprising all subjects with sufficient data to perform the below analyses as of June 2019. Cognitively normal controls (n = 28) alongside subjects with a diagnosis of MCI (n = 32) or AD (n = 26) were identified. All subjects had both [18F]AV-1451 PET, structural T1-weighted MRI and DWI data acquisition, as specified below. A total of 78 subjects, 27 cognitive normal controls, 32 MCI and 19 AD patients, also underwent [18F]AV-45 PET imaging. Groups were matched for age and gender.
Subject clinical characteristics
AD, Alzheimer’s disease; CDR-SB, Clinical Dementia Rating Sum of Boxes; FAQ, Functional Activities Questionnaire; HC, healthy controls; MCI, mild cognitive impairment; MMSE, Mini-Mental State Examination; MoCA, Montreal Cognitive Assessment; RAVLT, Rey Auditory Verbal Learning Test. Between group differences assessed with ANOVA, with Bonferroni post hoc correction. aOne HC, two MCI, and eight AD patients had unknown APOE status. bThree patients with AD had no amyloid-β data available. cOne patient with AD had no FAQ score available.
Clinical assessments
All participants completed a battery of cognitive assessments (Table 1). The Mini-Mental Status Examination (MMSE) and Montreal Cognitive Assessment (MoCA) are both 30-point assessments of global cognitive status, with low scores indicating increased impairment. The Clinical Dementia Rating Sum of Boxes (CDR-SB), another global assessment of cognition, is a variant of the Clinical Dementia Rating (CDR) scale which provides an increased range of values compared to the CDR, allowing the CDR-SB to discriminate both between and within groups of patients with AD and MCI [52]. The CDR-SB is scored out of 18, with higher scores indicating increased impairment. The Rey Auditory Verbal Learning Test (RAVLT) is a validated assessment of episodic verbal memory, capable of differentiating between and predicting the conversion from MCI to AD [53, 54]. The RAVLT-immediate assesses immediate recall of 15 words across five consecutive trials, with a maximum score of 75 indicating perfect immediate recall. The RAVLT-forgetting score examines delayed recall; scoring for those words recalled in a fifth trial, minus those recalled in a further trial, 30 minutes later; a higher score indicates more words forgotten [55]. The Functional Activities Questionnaire (FAQ) assesses a participant’s ability to perform a number of activities, such as assembling tax records, or shopping alone. The FAQ is able to sensitively distinguish patients with mild AD from those with MCI or healthy controls; higher scores indicate increased deficits [56, 57].
Blood samples were taken to assess apolipoprotein E (APOE) genotype status. The ɛ4 polymorphism of the APOE gene is the strongest genetic risk factor for late onset AD [58].
Scanning procedures
All T1-weighted MRI, DWI MRI, [18F]AV-1451 PET, and [18F]AV-45 PET scans for each patient were collected within a mean 46-day (range 1–264 days) time window for all cognitive assessments and imaging scans.
Magnetic resonance imaging
All participants were scanned according to standardized protocols to maximize consistency across ADNI sites. 3T field strength T1-weighted three dimensional images were acquired at 1 mm3 resolution on Siemens or General Electric (GE) MRI scanners (Siemens: magnetization-prepared rapid acquisition gradient-echo, time repetition, 2300 ms; time echo, 2.98 ms; flip angle, 9°; time inversion, 900 ms; matrix: 208×240×256 mm. GE: fast spoiled gradient-echo, time repetition, 7.2–7.4 ms; time echo, 2.94–3.02 ms; flip angle, 11°; time inversion, 400 ms; matrix: 196×256×256 mm) [59].
DWI scans were acquired at 2 mm3 resolution along 48 isotropically distributed gradient directions at b = 1000 s/mm2 (Siemens: time repetition, 7200–9600 ms; time echo, 56–82 ms; flip angle, 90°; matrix: 232×232×160 mm. GE: time repetition, 7800 ms; time echo, 55–60 ms; flip angle, 90°; matrix: 232×232×138 mm). Non-diffusion-weighted (b0) images were also acquired during each scan.
Positron emission tomography
AV-1451 and [18F]AV-45 PET acquisition was performed using a number of different scanners by Siemens, GE, and Philips, as described previously [60]. Participants underwent a 20 min dynamic scan consisting of four 5 min frames acquired 50 min after administration of [18F]AV-45 at a target dose of 370 MBq±10%; and a 30 min dynamic scan consisting of six 5 min frames acquired 75 min post injection of [18F]AV-1451 at a target dose of 370 MBq±10%.
To improve consistency between different PET scanners, pre-processing of [18F]AV-1451 and [18F]AV-45 PET data was conducted within ADNI using a standardized pipeline to produce normalized images with a uniform 1.5 mm3 voxel size and isotropic resolution of 8 mm full width at half maximum [61].
Imaging data analysis
Structural MRI analysis and regions of interest
T1-weighted images were co-registered to each subject’s diffusion weighted image space by creating a transformation matrix using FMRIB’s Linear Image Registration Tool within the FMRIB Software Library (FSL; version 5.0.8; http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/). The transformation matrix was subsequently applied by MRtrix’s mrtransform tool [62]. This method maintains T1 resolution despite the inferior resolution of the target diffusion weighted image [62–64]. T1-weighted images, in diffusion space, were segmented using the Desikan-Killiany atlas and subcortical segmentation in FreeSurfer image analysis suite (version 5.3; http://surfer.nmr.mgh.harvard.edu) to produce 84 subject specific regions of interest (ROIs) [65]. Segmented data sets were visually inspected to ensure accuracy of skull stripping, segmentation, and cortical surface reconstruction; manual correction of the FreeSurfer derived pial surface and segmentation was performed where required.
The distribution of tau and amyloid-β, assessed using [18F]AV-1451 and [18F]AV-45 PET, respectively, were examined in relation to the histological staging; for tau described by Braak and colleagues [1, 67], and amyloid-β as described by Thal and colleagues [68, 69]. The FreeSurfer derived ROIs do not provide an exact replication of the anatomical delineation of the Braak stages. The tau staging used herein therefore uses an approximation of the Braak stages derived from FreeSurfer ROIs, as previously demonstrated by Schöll and colleagues [33].
PET data analysis
Partial volume correction of [18F]AV-1451 data was performed using the Rousset Geometric Transfer Matrix method [70, 71]. This reduces the effects from the off-target binding of [18F]AV-1451 by correcting for the spillover of PET signal from areas with off-target binding, such as the choroid plexus, into neighboring areas including the hippocampus [72]. [18F]AV-1451 standardized uptake value ratio (SUVr) for each FreeSurfer derived ROI was calculated using the inferior cerebellum, derived from the SUIT template (http://www.diedrichsenlab.org/imaging/suit.htm) in Statistical Parametric Mapping (SPM; version 12; http://www.fil.ion.ucl.ac.uk/spm/), as the reference region [73, 74]. [18F]AV-45 SUVr were calculated for each FreeSurfer derived ROI with the Analyze medical imaging software package (version 12.0; Mayo Foundation AnalyzeDirect, United States) using the entire cerebellum as a reference region [75].
In light of reported off-target binding of [18F]AV-1451, the basal ganglia and thalamus were excluded from all [18F]AV-1451 analyses [76]. Additionally, the partial volume correction procedure utilized herein produces composite ROIs from the caudal and rostral middle frontal gyri; the orbitofrontal gyri and frontal pole; and the pars constituents of the inferior frontal gyrus [71]. This leaves 64 ROIs for the analyses of [18F]AV-1451 PET data, as opposed to 82 ROIs for all other analyses. To assess the extent of effect of off target binding from the choroid plexus on the hippocampus, and the adequacy of the partial volume correction on correcting this, we calculated the correlation between [18F]AV-1451 SUVr in the hippocampi and the adjacent choroid plexus, before after partial volume correction.
Separately, to determine amyloid-β positivity, we used [18F]AV-45 SUVr values calculated within ADNI using a composite cortical ROI and using cut off value derivation as previously described [77–79]. [18F]AV-45 SUVr > 1.11 was defined amyloid positive. Four AD patients, and one control subject, without [18F]AV-45 SUVr data available ([18F]AV-1 was used instead), with those with a [18F]AV-1 SUVr > 1.08 designated amyloid positive.
Connectome construction
Pre-processing of DWI was performed using MRtrix and FSL Diffusion Toolbox to correct for noise, eddy current distortion, subject motion, and B1 field inhomogeneity [80–83]. Probabilistic anatomically constrained tractography was performed using constrained spherical deconvolution in MRtrix [62, 85]. Briefly, response functions for spherical deconvolution were calculated prior to estimation of the fiber orientation distributions. Tractography was performed utilizing the iFOD2 probabilistic algorithm with the subject specific five-tissue-type segmentation produced from subject specific FreeSurfer derived tissue segmentations [44]. Seed points were determined dynamically utilizing the spherical-deconvolution informed filtering of tractograms (SIFT) model until ten million completed streamlines were generated [43, 85]. The SIFT2 algorithm was then used on all tractograms, this improves the anatomical validity of whole brain tractograms and allows streamline count to be used as a marker of connection density [43, 86]. Finally, connectome matrices were created by assigning each streamline termination to the nearest FreeSurfer defined ROI (within a 2 mm radius) and calculating the number of streamlines connecting each pair of regions (edge weight). Connections to ipsilateral and contralateral regions are included in all analyses, unless specified. Connectome visualization was performed with Circos [87], and all connectome measures were derived with the Brain Connectivity Toolbox [88].
To detect more subtle changes in connectivity, a further analysis examined alterations in connectivity between the hippocampus and ipsilateral limbic structures implicated in emotion and cognition [89, 90]. Ipsilateral connections between the hippocampi and accumbens area, amygdala, cingulate cortex, entorhinal cortex, frontal pole, insula cortex, orbitofrontal cortex, parahippocampal gyrus, and thalamus were examined. These regions encompass a broad selection of regions implicated in the limbic processing, excluding the mamillary bodies as they are not included in the FreeSurfer segmentation [91, 92].
The strength, also referred to as weighted degree, of a region is the sum weight of all connections to the region [88]. This is calculated by counting the total number of connections from each region to all other regions.
Regional and global correlations
To assess whether regions with higher tau or amyloid-β burden have alterations in connectivity, the correlation between [18F]AV-1451 SUVr, [18F]AV-45 SUVr, and strength was examined. Correlations were examined both regionally and globally. Regional correlations examine the correlation within each ROI separately. In light of the symmetrical distribution of amyloid-β and tau, and to enable detection of correlations between [18F]AV-1451, [18F]AV-45, and strength within each region while reducing the number of multiple comparisons, bilateral regions were examined. Global correlations examine the correlation between [18F]AV-1451 SUVr, [18F]AV-45 SUVr, and strength across all brain regions together at the same time, allowing any global effect of these proteins on strength or on each other to be examined. Prior to examination of global correlations, the strength of each ROI, for each subject, was normalized as a percentage of the control mean of that region. Without this correction larger ROIs, in general, would have greater strength. This normalized value is also used to aid visualization of strength values within all figures.
To determine if global amyloid-β deposition is related to hippocampal tau deposition, or hippocampal connectivity, we examined the correlation between both hippocampal [18F]AV-1451 SUVr, and hippocampal strength, with [18F]AV-45 SUVr in a composite region, comprising the frontal, cingulate, parietal, and temporal regions bilaterally. This composite region was selected due to the relative susceptibility of the contained regions to amyloid-β deposition [77, 93].
Statistical analysis
Statistical analysis and graph illustration were performed with SPSS (version 20 Chicago, IL, USA) and GraphPad Prism (version 6.0c) for MAC OS X, respectively. Connectomes with 82 ROIs (nodes) have 3,321 possible edges. Therefore, standard statistical tests are underpowered when correcting for multiple comparisons at both the edge and ROI level. Controlling the False Discovery Rate (FDR) using the Benjamini and Hochberg equation allows for correction of multiple comparisons while identifying significant between-group differences at individual edges and ROIs [94–96].
Connectomes were thresholded by removing the weakest 0.5%of all edges by edge weight; this minimizes noise and removes clearly unconnected regions from the analysis. Between-group differences in thresholded connectomes at the edge level, connectome metrics, and [18F]AV-1451 and [18F]AV-45 PET SUVr at the nodal level were calculated using analysis of covariance (ANCOVA) including age and gender as covariates in all analyses.
Covariate-adjusted Pearson product-moment correlation analysis was used to determine the relationship between connectome measures, [18F]AV-1451 and [18F]AV-45 PET SUVr, and cognitive scores at the nodal level, while controlling for age and gender. To ensure that correlations were not driven by outlier variables, outlying values were identified using robust regression and outlier removal (ROUT, Q = 1%) in GraphPad Prism [97]. The linear relationship between these variables was confirmed by visual assessment of the scatter plots. The correlation between hippocampal connectivity and [18F]AV-45 SUVr in the target region of those hippocampal connections was assessed with Spearman’s rank order correlation, this was used due to a non-linear relationship between these variables.
To examine if APOE ɛ4 allele carrier status effects the regional distribution of tau and amyloid-β deposition, or connectome alterations, its effect on regional [18F]AV-1451 SUVr, [18F]AV-45 SUVr, and strength were examined using ANCOVA, with age and gender as covariates in all analyses.
FDR correction for multiple comparisons was performed for all of the above analyses; results are considered significant at a threshold of p < 0.05 (FDR corrected). Between-group differences in clinical variables were calculated using analysis of variance (ANOVA) with Bonferroni post-hoc correction, apart from categorical data, for which Pearson’s Chi Squared test was used.
RESULTS
Clinical characteristics
AD patients performed worse compared with healthy controls and patients with MCI on the CDR-SB (p < 0.001), MMSE (p < 0.001), MoCA (p < 0.001), and RAVLT-immediate (p < 0.001, Table 1). MCI patients performed worse on the CDR-SB (p < 0.001), MoCA (p < 0.001), and RAVLT-immediate tests (p < 0.001) compared with healthy controls. 88%of AD patients failed to remember any words during the RAVLT-forgetting test, limiting the utility of this test tests for discriminating between patients with AD. One outlying CDR-SB score was identified in the AD group; this patient was subsequently removed from all correlation analyses involving CDR-SB.
There were significantly more females in the control group compared to patients with MCI (p = 0.009) and AD (p = 0.007). Gender was therefore used as a covariate, alongside age, in all analyses. One or more APOE ɛ4 alleles was present in 30%of healthy controls, 40%of MCI, and 56%of AD patients. No significant difference was detected between groups; however, APOE status was not available in one healthy control, two patients with MCI, and eight patients with AD (Table 1). There were significantly more amyloid positive patients in the AD group (87%) compared to MCI (41%, p = 0.001), and healthy controls (25%, p < 0.001), but no significant difference between healthy controls and MCI.
Alterations in microstructural connectivity in MCI and AD
After thresholding, 1,566 edges remained for analysis. Reduced connectivity was detected between multiple brain areas in AD compared to controls, predominantly involving medial temporal structures, in particular the hippocampus (Fig. 1, Table 2). Many of the regions showing reduced connectivity in AD, also showed reduced connectivity in MCI compared to controls; however, they did not remain significant after FDR correction. Increased connectivity was also noted, between the right amygdala and right temporal structures in AD compared to controls.

Widespread connectome changes in Alzheimer’s disease. Connectogram rendering of whole brain structural connectivity in Alzheimer’s disease (AD) compared to healthy controls. [18F]AV-1451 SUVr and [18F]AV-45 SUVr (above controls mean), and strength (percent of controls mean) of each region are indicated. Connecting lines between regions represent significantly decreased (red) or increased (green) connectivity (FDR corrected). Line weights are proportional to differences in connectivity (change in mean number of streamlines compared to healthy controls).
Microstructural connectivity in mild cognitive impairment and Alzheimer’s disease compared to healthy controls
AD, Alzheimer’s disease; Banks STS, Banks of the superior temporal sulcus; HC, healthy controls; L, Left; MCI, mild cognitive impairment; R, right; SD, standard deviation. *Uncorrected p value provided where FDR corrected p > 0.05. All other p values are FDR corrected.
Reduced hippocampal connectivity in MCI and AD
When assessing hippocampal connectivity to ipsilateral limbic structures, after thresholding, 15 edges remained for analysis, in line with areas of maximal hippocampal connectivity in the literature [98]. There were widespread reductions in connectivity in AD compared to controls (Fig. 2B, Supplementary Table 1). Notably, significant reductions were also present in the MCI cohort compared to controls; between the hippocampus and ipsilateral thalamus, bilaterally, and the right hippocampus and ipsilateral orbitofrontal cortex and amygdala (Fig. 2A, Supplementary Table 1).

Reduced hippocampal connectivity in mild cognitive impairment and Alzheimer’s disease. When examining connectivity between the hippocampus and ipsilateral limbic structures, reduced connectivity was detected in mild cognitive impairment (MCI; A) and Alzheimer’s disease (AD; B) compared to healthy controls. [18F]AV-1451 SUVr and [18F]AV-45 SUVr (above controls mean), and strength (percent of controls mean) of each region are indicated. Connecting lines between regions represent significantly reduced connectivity (FDR corrected). Line weights are proportional to differences in connectivity (change in mean number of streamlines compared to healthy controls).
Global cortical [18F]AV-45 SUVr is not related to hippocampal [18F]AV-45 SUVr or hippocampal strength
There was no significant relationship between cortical [18F]AV-45 SUVr in a composite region comprising the frontal, cingulate, parietal, and temporal regions bilaterally and either hippocampal [18F]AV-1451 SUVr or hippocampal strength in healthy controls, MCI, or AD.
Reduced hippocampal connectivity is related to [18F]AV-45 SUVr in the target region of those same hippocampal connections
Reductions in connectivity between the hippocampus and ipsilateral brain regions correlated with increased [18F]AV-45 SUVr in the target regions of those same connections in MCI (r = –0.33, p = 0.003) and AD (r = –0.31, p = 0.006) compared to healthy controls, and AD compared to MCI (r = –0.25, p =0.023). There were no such relationships for [18F]AV-1451 SUVr.
Reduced regional strength in MCI and AD
In AD, there was reduced strength in the left (p = 0.006) and right (p = 0.022) hippocampus, left accumbens (p = 0.049), right caudate (p = 0.049), and right putamen (p = 0.049) compared with healthy controls (Supplementary Table 2). MCI patients had reduced strength in the left (p = 0.013 uncorrected) and right (p = 0.002 uncorrected) hippocampus, however this did not remain significant after FDR correction for multiple comparisons.
Region of interest [18F]AV-1451 and [18F]AV-45 PET findings in MCI and AD
[18F]AV-1451 PET
Of those 64 ROIs assessed, [18F]AV-1451 SUVr was increased in 61 ROIs in AD compared with healthy controls including both entorhinal cortices (p < 0.001), amygdalae (p < 0.001), and hippocampi (p < 0.001), and 48 ROIs in AD compared with MCI including the left entorhinal cortex (p = 0.012), left amygdala (p = 0.035), right amygdala (p = 0.015), left hippocampus (p = 0.003), and right hippocampus (p = 0.016, Supplementary Table 3). Prior to correction for multiple comparisons, ten of these same regions had increased [18F]AV-1451 SUVr in MCI compared with healthy controls including the left entorhinal cortex (p = 0.007), right entorhinal cortex (p = 0.029), left amygdala (p = 0.002), right amygdala (p = 0.005), left hippocampus (p = 0.003), and right hippocampus (p = 0.008); however, they did not remain significant after FDR correction.
Prior to partial volume correction increased choroid plexus [18F]AV-1451 SUVr correlated with higher hippocampal [18F]AV-1451 SUVr (r = 0.29, p = 0.006). After partial volume correction there was no longer any relationship between choroid plexus and hippocampal [18F]AV-1451 SUVr (r = 0.01, p = 0.94).
[18F]AV-45 PET
AV-45 SUVr was increased in AD compared to controls in 69 of 82 ROIs examined including in the nucleus accumbens bilaterally (p < 0.001). In 53 ROIs [18F]AV-45 SUVr was increased in AD compared with MCI including in the left (p = 0.020) and right nucleus accumbens (p < 0.018; Supplementary Table 4). While [18F]AV-45 SUVr was almost universally increased in AD compared with healthy controls and MCI, there was no significant difference in [18F]AV-45 SUVr within the entorhinal cortices or right hippocampus between groups, while in the left hippocampus, [18F]AV-45 SUVr was reduced in AD (p = 0.035) compared with healthy controls. There was no significant increase in [18F]AV-45 SUVr in MCI compared to healthy controls in any region.
Global correlations between [18F]AV-1451 SUVr, [18F]AV-45 SUVr, and strength in AD and MCI
Increased global [18F]AV-1451 SUVr correlated with reduced strength in MCI (r = –0.07, p = 0.001) and AD (r = –0.10, p < 0.001), while there was no correlation between [18F]AV-45 SUVr and strength in controls, MCI, or AD (Supplementary Table 5). Increased global [18F]AV-1451 SUVr correlated with increased [18F]AV-45 SUVr in controls (r = 0.15, p < 0.001), MCI (r = 0.18, p < 0.001), and AD (r = 0.16, p < 0.001, Supplementary Table 5).
Regional correlations between [18F]AV-1451 SUVr, [18F]AV-45 SUVr, and strength in AD and MCI
In the hippocampus, increased [18F]AV-1451 SUVr correlated with reduced hippocampal strength in MCI (r = –0.55, p = 0.049, Fig. 3A) and AD (r =–0.56, p = 0.046; Fig. 3B). Additionally, increased [18F]AV-1451 SUVr correlated with reduced strength in the middle temporal gyrus (r = –0.69, p = 0.006, Fig. 3C) and inferior parietal gyrus (r = –0.56, p =0.046, Fig. 3D) in AD. There was no significant correlation between [18F]AV-45 SUVr and strength in any region after correction for multiple comparisons in AD or MCI.

Correlations between connectome strength and [18F]AV-1451 SUVr in mild cognitive impairment and Alzheimer’s disease. Increased [18F]AV-1451 standardized uptake value ratio (SUVr) correlated with reduced strength within the hippocampi in both mild cognitive impairment (MCI; A) and Alzheimer’s disease (AD; B). In AD, increased [18F]AV-1451 SUVr also correlated with reduced strength in the middle temporal gyri (C) and inferior parietal gyri (D).
Correlations between regional [18F]AV-1451 and [18F]AV-45 SUVr in MCI
In MCI patients, increased [18F]AV-1451 SUVr correlated with increased [18F]AV-45 SUVr across a number of neocortical areas within Thal’s stage 1 of amyloid-β deposition in AD, with the exception of the isthmus of the cingulate gyrus which is within Thal stage 2 (Supplementary Table 6). No significant correlations between [18F]AV-1451 SUVr and [18F]AV-45 SUVr were present in AD.
Correlations with cognitive scores in MCI and AD
Connectome strength and cognitive scores
In AD, lower RAVLT-immediate scores correlated with reduced left hippocampal strength (r = 0.69, p = 0.024, Fig. 4A). Strength of the right hippocampus also correlated with the RAVLT-immediate score; however, this did not survive FDR correction for multiple comparisons (r = 0.56, p = 0.005 uncorrected). Furthermore, lower MoCA scores correlated with reduced strength of the right banks of the superior temporal sulcus (r = 0.67, p = 0.038) in AD (Fig. 4B).

Correlations between connectome strength and cognitive scores in mild cognitive impairment and Alzheimer’s disease. In Alzheimer’s disease (AD), lower Rey Auditory Verbal Learning Test (RAVLT)-immediate scores correlated with reduced left hippocampal strength (A), and lower Montreal Cognitive Assessment (MoCA) scores correlated with reduced strength in the right banks of the superior temporal sulcus (STS) (B). Lower scores on both of these cognitive scales represent increased impairment. In mild cognitive impairment (MCI), reduced strength in the left inferior temporal gyrus correlated with reduced Functional Activities Questionnaire (FAQ) scores (C), indicating increased impairment, while reduced right temporal pole strength in MCI correlated with higher RAVLT-forgetting scores, indicating greater impairment (D).
In MCI, higher FAQ scores correlated with increased strength in the left inferior temporal gyrus (r = 0.61, p = 0.031, Fig. 4C), while higher RAVLT-forgetting scores correlated with reduced strength of the right temporal pole (r = –0.60, p = 0.035, Fig. 4D), indicating that MCI patients with increased strength in the right temporal pole forgot fewer words.
[18F]AV-1451 and [18F]AV-45 PET and cognitive scores
Increased impairment on CDR-SB and MMSE scores correlated with higher [18F]AV-1451 SUVr in regions corresponding to Braak stages I-IV in MCI, predominantly within limbic structures (Fig. 5, Supplementary Table 7). In the AD cohort, higher CDR-SB scores correlated with higher [18F]AV-1451 SUVr across regions corresponding to Braak stages III-VI, with the notable exception of regions in Braak stage I-II in which correlations were present in MCI (Fig. 5, Supplementary Table 8). There were no significant correlations between [18F]AV-1451 SUVr and MMSE in patients with AD. This pattern was noted after completion of our analysis; we have not statistically compared these grouped results between patient groups due to the inherent bias in such an analysis at this stage.

Significant correlations between cognitive scores and [18F]AV-1451 SUVr in regions corresponding to Braak’s staging in mild cognitive impairment and Alzheimer’s disease. Graphical representation of differing distributions of correlation of cognitive scores with [18F]AV-1451 SUVr in mild cognitive impairment (MCI) and Alzheimer’s disease (AD). In MCI, increased impairment on MMSE and CDR-SB correlated with [18F]AV-1451 SUVr in regions corresponding to early Braak stages (I-IV), while the CDR-SB in AD correlated with [18F]AV-1451 SUVr in regions corresponding to the later Braak stages (III-VI).
There was no significant correlation between [18F]AV-45 SUVr in any region with CDR-SB or MMSE scores in AD or MCI.
The effect of APOE status on the connectome, [18F]AV-1451 and [18F]AV-45 SUVr
Carriers of one or more copies of APOE ɛ4 had a significantly higher global [18F]AV-45 SUVr (1.48±0.09) than non-carriers in AD (1.35±0.16; p = 0.045). APOE ɛ4 allele carrier status had no significant effect on global [18F]AV-1451 SUVr or strength in MCI or AD, or global [18F]AV-45 SUVr in MCI. There was no interaction between APOE4 status and regional [18F]AV-1451 SUVr, [18F]AV-45 SUVr, or strength in any group.
DISCUSSION
Using multi-modal imaging, we demonstrate microstructural connectivity changes between regions of increased tau pathology in MCI and AD, shedding light on the relationship between the accumulation of tau pathology and the neurodegenerative process of AD. Reductions in hippocampal connectivity predominate in the AD connectome, with more marginal changes in MCI. Reduced hippocampal connectivity was associated with hippocampal tau accumulation in both MCI and AD, while cognitive scores reflect the sequential spread of tau pathology. Our findings suggest that the accumulation of tau pathology underlies the reductions in microstructural connectivity that contribute to the development of cognitive decline in MCI and AD.
Reductions in hippocampal connectivity are associated with tau pathology in MCI and AD
When all brain regions are examined together, we demonstrate that regions with higher tau deposition, in general, have reduced structural connectivity in both MCI and AD. However, this negative correlation between tau deposition and regional strength is weaker than would be expected were tau deposition the only determinant of degeneration. Many areas with a high tau burden have minimal reductions in connectivity strength. A far stronger relationship between tau deposition and strength is present when assessed within specific regions. Hippocampal tau deposition is strongly associated with reduced hippocampal connectivity in both MCI and AD; suggesting that tau is central to the degenerative process in the hippocampus, acting prior to the clinical onset of AD.
Reductions in hippocampal connectivity are related to amyloid-β pathology in the target of those connections in MCI and AD
We have shown that reductions in hippocampal connectivity in MCI and AD are significantly related to the levels of amyloid-β within the targets of those same hippocampal connections. Hippocampal connections to areas with greater amyloid-β deposition had greater reductions in connectivity to those same areas in both MCI and AD when compared to healthy controls, and in AD compared to MCI. We could not demonstrate a relationship between hippocampal strength and global amyloid-β deposition, potentially reflecting the fact that examining amyloid-β deposition across the whole brain overlooks the local effects of a sequential disease process.
The distribution of amyloid-β in AD, distant from the hippocampal epicenter of the neurodegenerative process, has long been one of the unresolved problems of the amyloid hypothesis. While progressive amyloid-β deposition has been related to disease progression, the nature of this relationship remains unclear [2, 69]. Here we show that amyloid-β deposition distant to the hippocampus is directly related to reductions in hippocampal connectivity to these same areas in MCI and AD; suggesting that amyloid-β is directly, and spatially linked to the neurodegenerative process. Given that there is no relationship between local amyloid-β deposition and reductions in microstructural connectivity, it appears unlikely that this effect is a direct toxic effect of amyloid-β upon the neurons that make up these connections. Instead, such distant effects may fit with proposed transneuronal, prion-like, or downstream effects of amyloid-β in the neurodegenerative process, as well as theories of a synergistic role for amyloid-β and tau [49, 99–102]. Both amyloid-β and tau appear to have an effect upon the hippocampus, tau acting locally, and amyloid-β via its hippocampal connections.
Degeneration of hippocampal connections underlies cognitive decline in MCI and AD
Increasing evidence implicates degeneration in the Papez circuit, and in particular the limbic thalamus, in the early stages of AD [90, 104]. Degeneration of these pathways, integral to the consolidation of memory and emotional processing, provide an anatomical correlate for the clinical presentation of AD. We demonstrate bilateral reductions in hippocampo-thalamic connectivity to be foremost among the microstructural aberrations of MCI, alongside reduced right hippocampal connectivity to the ipsilateral amygdala and lateral orbitofrontal gyrus. Reduced hippocampal connectivity was far more widespread in AD, involving connections to numerous limbic structures, as well as the dorsal striatum, parietal and temporal areas. These reductions are not limited to hippocampal connections, with significantly reduced connectivity between numerous other limbic structures and components of the Papez circuit. Alongside evidence from lesioning and pharmacological studies suggesting a role the striatum in learning and memory, and morphological studies demonstrating associations between striatal atrophy and cognitive decline in AD [105–109], our results provide microstructural evidence for a loss hippocampo-striatal connectivity as part of the disease process of AD.
Using a number of cognitive measures, we demonstrate that reductions of microstructural connectivity are associated with cognitive decline in both MCI and AD. There are strong correlations between reduced strength of the left inferior temporal gyrus and FAQ scores in MCI; and reduced strength in the right banks STS and MoCA scores in AD. Cognitive assessments which target specific cognitive domains are warranted to assess the effects of degeneration within specific localized brain regions. The RAVLT score, a more straightforward test of episodic verbal memory, appears better suited in this regard. Impaired performance on RAVLT is associated specifically with lesions to medial and anterior temporal structures [110–115].
We demonstrate that the strength of the left hippocampus strongly correlates with RAVLT-immediate scores in AD, while in MCI the strength of the right temporal pole is strongly correlated with RAVLT-forgetting scores. Dysfunction in the anterior temporal lobes is increasingly implicated in disorders of semantic processing while functional activity of the anterior temporal network, which includes the temporal pole, is associated with performance in declarative memory tasks [116, 117]. In this context the association between RAVLT-forgetting score and right temporal pole strength suggests that early disruption in the anterior temporal network may account for some of the cognitive deficit in MCI. The use of the different components of the RAVLT herein was necessitated by the failure of the majority of the AD cohort to provide any correct answers on the more challenging RAVLT-forgetting test.
Previous studies have used machine learning approaches to predict RAVLT-immediate scores with moderate accuracy from atrophy on MRI using multiple brain areas in a regression model [53]. Our results suggest that regional connectivity may be superior to these volumetric measures and warrant further examination in longitudinal studies.
Cognitive decline reflects the accumulation of tau pathology in MCI and AD
The pattern of tau accumulation in AD is well established by histological studies [17, 66]. Here, we demonstrate that the entorhinal and hippocampal accumulation of tau is strongly correlated with the extent of cognitive decline in MCI, prior to the clinical onset of AD. In the AD cohort, in whom there is already significant tau deposition within the early Braak regions, the progression of cognitive decline instead follows the deposition of tau within the limbic and neocortical regions characterized by the later Braak stages (III-VI).
It has already been shown that baseline levels of tau and baseline cognitive scores can predict the rate of cognitive decline in AD [118, 119]. This study goes further by demonstrating, in vivo, that cognitive decline across the spectrum of MCI and AD follows the pathological progression of tau pathology. The correlation between tau deposition and hippocampal strength in both MCI and AD further supports a direct role of tau in the pathological process, providing a microstructural correlate for the cognitive decline.
In contrast to the relationships between tau, connectivity, and cognitive scores described here, no such relationships were present between amyloid-β deposition and either the cognitive or microstructural changes of AD. We demonstrate significantly increased amyloid-β deposition throughout the brain in AD, yet these increases are not related to global or regional connectome measures, or to cognition in AD or MCI. There was a weak but significant global relationship between levels of amyloid-β and tau deposition present in HC, MCI, and AD. However, given the divergent patterns of tau and amyloid-β accumulation in aging and AD, it is unclear whether these correlations represent causation or are simply the sequelae of two overlapping processes [66, 119].
In a condition characterized by amyloid-β deposition and hippocampal degeneration, it is striking that the hippocampus itself has the lowest [18F]AV-45 SUVr among all brain regions studied, with sequentially less hippocampal amyloid-β detected in patients with MCI and AD, reaching significance in the left hippocampus of patients with AD compared to controls. Histological studies have noted the paucity of amyloid-β within the hippocampus, limited primarily to the CA1 region in the middle and latter stages of the disease [66, 67]. The decreased hippocampal amyloid-β reported here may be partially artifactual, resultant on increased amyloid-β deposition in the cerebellum, to which the PET is normalized. Regardless, the hippocampi are clearly relatively devoid of amyloid-β when compared to the rest of the brain.
Limitations
The relatively small number of patients in this study was resultant on the requirement for adequate imaging across multiple imaging modalities. This will have limited the ability to detect subtle changes, as will the necessary but stringent statistical correction for multiple comparisons, where many regions are examined simultaneously. While some atlases provide smaller ROIs than those provided by the Desikan-Killiany atlas and subcortical segmentation used herein, demonstrating significant effects would have been challenging given the statistical correction for multiple comparisons required. More focused examination of the results reported here, in future studies, will allow confirmation of our findings and examination of the differential effects of the neurodegenerative process within smaller regions and tracts, while longitudinal studies can further examine any causal relationships suggested by this pseudo-longitudinal study.
Off target binding of the [18F]AV-1451 tracer within the basal ganglia and thalamus necessarily meant that these regions were excluded from this study. While a large number of studies have reported specific binding of the [18F]AV-1451 tracer when examining hippocampal tau deposition, including autoradiographic studies, some have reported erroneous results within the hippocampi due to the spill-off effects of off-target binding from the adjacent choroid plexus, despite partial volume correction [120–123]. The partial volume correction used herein appears to be resilient to these effects; while the potential for some contamination from the choroid plexus remains, the significant relationship between choroid plexus and hippocampal [18F]AV-1451 SUVr is no longer present after partial volume correction, while significant relationships between hippocampal [18F]AV-1451 SUVr and other metrics reported here would regardless appear extremely unlikely to be driven by binding from the choroid plexus.
This study does not explore the duration of pathological tau exposure in any region; those areas with recent tau deposition may be expected to have less degeneration despite high levels of tau than those regions with longer exposure. However, given increasing evidence of selective vulnerability of different neuronal subtypes, it is likely that underlying vulnerability of certain neuronal populations is a significant determinant of degeneration [31, 124–126]. Disruptions of hippocampal neurogenesis [127], neurotrophic signaling [128], and endosomal transport [129], have all been implicated in the selective vulnerability of particular neuronal populations in AD, as have the type and proportion of different neuronal subtypes [128, 130], yet the exact cause remains to be established.
In conclusion, we demonstrate widespread disruption of limbic circuitry in AD, alongside similar, if more marginal changes to hippocampal connections in MCI. While tau pathology is related to local microstructural changes and cognitive scores, reductions in hippocampal connectivity are correlated with levels of amyloid-β in the target regions of those connections. Amyloid-β and tau appear to have differential effects upon the hippocampus; tau acting locally, and amyloid-β via its hippocampal connections.
Footnotes
ACKNOWLEDGMENTS
Data collection and sharing for this project was funded by the Alzheimer’s Disease Neuroimaging Initiative (ADNI) (National Institutes of Health Grant U01 AG024904) and DOD ADNI (Department of Defense award number W81XWH-12-2-0012). ADNI is funded by the National Institute on Aging, the National Institute of Biomedical Imaging and Bioengineering, and through generous contributions from the following: AbbVie, Alzheimer’s Association; Alzheimer’s Drug Discovery Foundation; Araclon Biotech; BioClinica, Inc.; Biogen; Bristol-Myers Squibb Company; CereSpir, Inc.; Cogstate; Eisai Inc.; Elan Pharmaceuticals, Inc.; Eli Lilly and Company; EuroImmun; F. Hoffmann-La Roche Ltd and its affiliated company Genentech, Inc.; Fujirebio; GE Healthcare; IXICO Ltd.; Janssen Alzheimer Immunotherapy Research & Development, LLC.; Johnson & Johnson Pharmaceutical Research & Development LLC.; Lumosity; Lundbeck; Merck & Co., Inc.; Meso Scale Diagnostics, LLC.; NeuroRx Research; Neurotrack Technologies; Novartis Pharmaceuticals Corporation; Pfizer Inc.; Piramal Imaging; Servier; Takeda Pharmaceutical Company; and Transition Therapeutics. The Canadian Institutes of Health Research is providing funds to support ADNI clinical sites in Canada. Private sector contributions are facilitated by the Foundation for the National Institutes of Health (
). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer’s Therapeutic Research Institute at the University of Southern California. ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California.
Professor Marios Politis research is supported by Michael J Fox Foundation for Parkinson’s Research, Edmond and Lilly Safra Foundation, CHDI Foundation, Glaxo Wellcome R&D, Life Molecular Imaging, Invicro, Curium, Medical Research Council (UK), AVID radiopharmaceuticals, National Institute for Health Research, Alzheimer’s Research UK, and European Commission IMI2 fund. Doctor Josh King-Robson’s research is funded by the National Institute for Health Research (NIHR). The views expressed are those of the author(s) and not necessarily those of the NIHR or the Department of Health and Social Care.
