Herbal medicines have a long history of comprehensive cancer treatment through various posttranslational modifications (PTMs). Recently, emerging evidence revealed that dysregulation of reactive oxygen species (ROS) and ROS-regulated signaling pathways influence cancer initiation, growth, and progression in a paradoxical role with either low levels or increasing levels of basal ROS. However, ROS-triggered modifications of target proteins in the face of ROS-mediated signal transduction are not fully understood in the anticancer therapies of herbal medicines. In this review, we briefly introduce the PTM-dependent regulations of herbal medicines, and then focus on the current ideals that targeting ROS-dependent PTMs via antioxidant and redox signaling pathways can provide a promising strategy in herbal-based anticancer effects.
Recent Advances:
Advanced development in highly sensitive mass spectrometry-based techniques has helped utilize ROS-triggered protein modifications in numerous cancers. Accumulating evidence has been achieved in laboratory to extensively ascertain the biological mechanism of herbal medicines targeting ROS in cancer therapy. Two general mechanisms underlining ROS-induced cell signaling include redox state and oxidative modification of target protein, indicating a new perspective to comprehend the intricate dialogues between herbal medicines and cancer cellular contexts.
Critical Issues:
Complex components of herbal medicines limit the benefits of herbal-based cancer therapies. In this review, we address that ROS-dependent PTMs add a layer of proteomic complexity to the cancer through altering the protein structure, expression, function, and localization. Elaborating ROS-triggered PTMs implicated in cell signaling, apoptosis, and transcriptional regulation function, and the possible cellular signaling, has provided important information about the contribution of many ROS targeting herbal therapies in anticancer effects. Continued optimization of proteomic strategies for PTM analysis in herbal medicines is also briefly discussed.
Future Directions:
Rigorous evaluations of herbal medicines and proteomic strategies are necessary to explore the aberrant regulation of ROS-triggered antioxidant and redox signaling contributing to the novel protein targets and herbal-associated pharmacological issues. These efforts will eventually help develop more herbal drugs as modern therapeutic agents. Antioxid. Redox Signal. 42, 150–164.
Introduction
Roles and anticancer effects of herbal therapy
Traditional herbal medicines are reported to successfully play prominent roles in the strategy to contain and treat various human diseases, such as mental disorder, cardiovascular diseases, skin diseases, diabetes, jaundice, and hypertension. Despite the accumulated collected information into pharmacological properties and written evidence dating back over 5,000 years, the major use of herbal medicines and/or their formulae is for human health promotion and therapy for chronic conditions. During the past two decades, the use of herbal medicine has also greatly increased public interests in developed countries with their own manifestation in different cultures. Around 80% of population were utilized agents from natural plants or nutrients concurrently with traditional chemotherapy and/or radiation therapy (Amrati et al., 2021; Torre et al., 2015; Ullah et al., 2022), and about 50% of approved antitumor drugs that exhibit significant anticancer efficacy were obtained from natural products (Talib et al., 2022).
Herbal therapy has been globally practiced for many years. According to origin, evolution, and forms of usage, herbal medicines (also called herbalism, phytomedicine, or phytotherapy) are classified into four categories by the World Health Organization, containing (1) indigenous herbal medicines, (2) herbal medicines in systems, (3) modified herbal medicines, and (4) imported products with a herbal medicine base (Sammons et al., 2016). So far, a series of their bioactivations have been demonstrated, such as antiviral, antioxidant, hypoglycemic, anti-inflammatory, and immunostimulatory response, cardioprotective, and nephroprotective (Balsano and Alisi, 2009; Guo et al., 2022; Koehler et al., 2020; Zhang et al., 2021a). Their importance and popularity right now are recognized as important complementary and alternative remedies in modern clinical practice. Astragalus membranaceus (traditionally known as Huang qi) is commonly used for preventing acute respiratory tract infections in children, diabetes, cardiovascular disease, and renal disease (Ahmed et al., 2007; Gong et al., 2018; Huang et al., 2019; Su et al., 2016). The Nobel Prize in physiology and medicine was awarded to Youyou Tu in 2015 for the antimalarial drug artemisinin (qinghaosu) as a treatment for fever and malaria (Tu, 2011). Radix Astragali, Ginkgo biloba, Ginseng, Gynostemma pentaphyllum, and Ganoderma lucidum are recognized as antiaging phytotherapeutics (Phu et al., 2020). Quercetin, wogonin and rutaecarpine are the main bioactive components of Er Miao San in the treatments of human rheumatoid arthritis (RA), which plays an essential role in anti-inflammation via suppressing inflammatory cytokines (Guo et al., 2022).
Although clinically determined and improved safety, efficacy, and quality, there are also some concerns about the underlying mechanism of herbal medicines in cancer treatment. Considering that the majority of herbal medicines were prepared from decoction, some researchers also reported that herbal medicines can initiate toxic effects (Chaachouay et al., 2021), and most studied plants comprise toxic substances (Ishii et al., 1984). In addition, the general anticancer treatment should possess substantial capabilities of altering proliferation, migration, and apoptosis involved in a multitude of biological mechanisms. Therefore, in-depth and systematic studies of herbal medicines should be elusive to explain their molecular mechanism underlying herbal medicine recognized therapeutic benefits against cancers (Fig. 1).
Systematic study of herbal treatment cancers in posttranslational modifications (PTMs). Active ingredients extracted from herbal medicines (such as baicalein/wogonoside) with mild and broad-spectrum efficacy present a potential treasure trove of cancer treatment strategy through interacting and modulating PTMs in cellular and physiological processes. They have central roles in the development of various diseases through defending against tumor progression, contributing to an improved quality of life.
Anticancer effects of herbal medicines by interfering with posttranslational modifications
Proteins are elaborately modified by the covalent addition of functional moieties to the amino side chain, which facilitates their activity, stability, function, subcellular localization, and interacting network (Jensen, 2004) in the crowded cell microenvironment. Numerous cases have proved that these modifications play an important role in the dynamic regulation of protein–protein interactions (PPIs) to spatially organize diverse complexes with other cellular molecules, such as proteins, lipids, metabolites, and nucleic acids (Fig. 2). As a result, over 1 million human proteins have been identified within the last few decades, outnumbering the 20,000–25,000 human genes, in which one single gene encodes multiple proteins to expand the coding capacity. It is no surprise that a wide range of posttranslationally modified proteins and their interactions are implicated in various human diseases with herbal remedies. Collectively, scientists have discovered over 500 types of posttranslational modifications (PTMs) with the development of high-sensitivity mass spectrometry (MS), gradually deepening the complete and quantitative proteomes as well as their interactome (Aebersold and Mann, 2016). These PTMs have profound yet poorly understood effects on their physiological functions in human. In this section, we thus focus on the understanding of how herbal medicines regulate the cancer cellular pathways and disease processes via several popularly representative PTMs (ubiquitination, SUMOylation, phosphorylation, and acylation).
Proteins can be edited by a wide variety of posttranslational modification (PTM) mechanisms and their functional significance in the cellular microenvironment. Cellular PTMs provide a dynamic mechanism for the metabolic regulation, chromatin regulation, cancer signaling, immunomodulation, protein conformation, and interactions.
Ubiquitination
Ubiquitination refers to an important type of stepwise PTM that the direct modification of ubiquitin (Ub) is covalently installed on the target protein, tightly catalyzed at different levels by a range of indicated enzymes (including Ub-activating enzyme E1, Ub-conjugating enzyme E2, and Ub ligase E3, and an array of Ub-degrading enzymes DUBs) (Fig. 3A). Strikingly, the indirect regulation of ubiquitination is crucial for ensuring the stability of endogenous proteins, the activity of enzymes, and the facilitation of PPIs across a variety of cellular functions (Cai et al., 2018). Thereby notably functional herbal medicines targeting the Ub enzymes of the ubiquitin–proteasome system (UPS) are considered to be important for cancer treatment and prevention. In this part, we discuss the ubiquitination enzymes and targets in the herbal-treatment cancers and highlight several major clinical herbal medicines that regulate the UPS.
The signaling mechanisms and cellular functions of ubiquitination/SUMOylation pathways. (A) Sumoylation is a cascade of enzymatic steps that involve an E1 activating enzyme, an E2 conjugating enzyme, and an E3 SUMO ligase. Mature SUMO is immature and cleaved to expose the C-terminal Gly–Gly motif; then, mature SUMO requires ATP to conjugate E1 at its cysteine residue, transfer to the cysteine residue of E2 that recognizes the lysine residue of the substrate protein under E3 SUMO ligases. Dynamic SUMOylation affects the protein functions in various manners, including protein interaction, oncogenic activity, and protein stability. (B) Shikonin promotes ubiquitination and degradation of cIAP1/2-mediated apoptosis and necrosis. After treatment with Shikonin, cIPAs, such as E3-like ubiquitination enzyme, enter into autoubiquitination process and are degraded by proteasome, which triggers the activation of the noncanonical pathway, NIK (NF-κB-inducing kinase)-Tumor necrosis factor (TNF) signaling.
Glioblastoma (GBM) is a type of fast-growing, low-survival, and aggressive brain tumor in children and adults, but there is a lack of significantly effective therapies. In a study by Sun et al., acevaltrate, an active component from the plant Valeriana jatamansi Jones, suppressed USP10-mediated deubiquitylation on cyclin D1 (CCND1) for CCND1 degradation, caused GBM cell cycle arrest at G1 phase and induced GBM cell apoptosis (Sun et al., 2021), because USP10 stabilizes CCND1 by preventing K48-linked polyubiquitination in GBM. Polyphyllin I (PPI) from Polyphylla rhizomes displays anticancer activity in many kinds of cancers. In a study by Liu et al., Polyphyllin I (PPI) selectively inhibited the unfolded protein response (UPR)-induced glucose-regulated protein 78 (GRP78) levels to prevent C/EBP homologous protein from the GRP78-mediated ubiquitination and degradation in the non-small-cell lung cancer (NSCLC) cell (Liu et al., 2021). Shikonin, a naphthoquinone from Arnebiae Radix, has triggered both necrosis and apoptosis in a triple-negative breast cancer (TNBC) cell, in which shikonin promoted the autoubiquitination and degradation of cellular inhibitor of apoptosis protein 1 (cIAP1) and cIAP2 but induced the ubiquitination and inactivation of the receptor-interacting protein 1, one substrate of cIAP1 and cIAP2 (Wang et al., 2021) (Fig. 3B). In addition, herbal-mediated ubiquitination has also been used to treat and prevent atherosclerotic cardiovascular and cerebrovascular diseases. Choi et al. found the first molecular evidence for the antihypercholesterol activity of platycodin D, a triterpenoid saponin from Platycodon grandiflorum (Choi et al., 2020). Platycodin D increased the half-life of cell surface low-density lipoprotein receptor (LDLR) protein by reducing the E3 Ub ligase named inducible degrader of the LDLR (IDOL) ubiquitination in HepG2 cell. Zhang et al. discovered one natural small-molecule eupalinolide B to allosterically inhibit Ub-specific protease (USP7), blocking microglial activation and the resultant neuron injury (Zhang et al., 2022b). USP7 inhibition caused a Keap1 degradation to activate the antineuroinflammation genes in microglia of dementia and Parkinson’s disease mouse models. Another example is ginsenosides from the plant Panax with low toxicity, popularly used in food and traditional herbal medicine for more than 1000 years. Previous studies have demonstrated their inhibitory effects on the 26S proteasome or Ub enzyme in UPS (Chang et al., 2014).
SUMOylation
Similarly, small Ub-like modifiers (SUMOs) are another family of small proteins that directly form covalent bonds with lysine residues on proteins. The indirect regulatory functions of SUMOs encompass DNA damage repair, carcinogenesis, immune response, cell cycle progress and apoptosis, and protein stability (Suk et al., 2015). A study by Cheng et al. investigated that resveratrol treatment caused the phosphorylation of p53 Ser15 and the nuclear translocation of mitogen-activated protein kinase (ERK1/2) to accumulate cyclooxygenase (COX)-2 and formed a complex with p53 and SUMO-1, which binds and enhances p53-responsive proapoptotic genes in prostate cancer LNCaP cell (Cheng et al., 2018). Wogonin is an active monoflavonoid that fully reversed the impaired function of the VHL ubiquitination complex in multiple myeloma cell via promoting HIF-1a-VHL interaction and HIF-1a degradation (Fu et al., 2016). The extracts of Ginkgo biloba L. seeds contain numerous components, in which ginkgolic acids have also been suggested as SUMOylation inhibitors with significant therapeutic potential in inflammatory and oncologic diseases (Shanmugam et al., 2021).
Phosphorylation
Phosphorylation direct modification is enacted by kinases that target specific amino acids (commonly serine, threonine, or tyrosine) in proteins for phosphate group transfer, and phosphatases that remove these groups. On the contrary, indirect regulation of phosphorylation does not directly engage in the addition or removal of phosphate groups but influences the phosphorylation process through a variety of mechanisms. Reversible protein phosphorylation is one of the most prevalent and well-studied PTMs tightly associated with many protein activities and most signaling pathways (mainly including Wnt/β-catenin, Notch, nuclear factor kappa-B (NF-κB), phosphoinositide 3-kinase (PI3K)/AKT (PI3K/Akt), mitogen-activated protein kinase (MAPK), The Janus kinase/signal transducer and activator of transcription (JAK/STAT), Transforming growth factor beta (TGF-β)/Smad (TGFβ/SMAD), and Hedgehog signaling pathways). It is estimated that more than two-thirds of the 21,000 proteins encoded by the human genome, also one-third of human proteome, are the phosphorylation substrates (Li et al., 2013). Phosphorylation principally occurs at the side chains of serine, threonine, or tyrosine residues with the nucleophilic (-OH) group that attacks the terminal phosphate group on the universal phosphoryl donor adenosine triphosphate (ATP), which is reversibly and specifically mediated by kinases and phosphatase, respectively. Therefore, multiple proteins and their modulations have been strongly linked to phosphorylation signaling pathways in herbal-treatment cancers (Fig. 4).
Herbal-modulated phosphorylation. Herbal medicines are able to affect the phosphorylation of key signaling proteins involved in cellular proliferation and survival pathways. Phosphorylation of tyrosine (Tyr), serine (Ser), and threonine (Thr) residues in proteins, mainly catalyzed by kinases, can be modulated by herbal compounds, resulting in critical signaling cascades, including cell proliferation and survival. For example, apigenin modulates the Wnt/β-catenin pathway, apigenin and ginkgolic acids modulate NF-κB, melanin, berberine, apigenin, curcumin, and wogonin modulate the MAPK/ERK pathway, Qingre Jiedu and apigenin modulate the JAK/STAT pathway, and apigenin, rapamycin, and OP16 modulate the PI3K/Akt pathway.
Apigenin (APG) is not only a common dietary flavonoid but also used in alternative medicine for asthma, Parkinson’s, neuralgia, and intransigent insomnia. In the last few decades, APG has been proven as an adjuvant chemotherapeutic agent for various cancer therapies by multiple signaling pathways, including PI3K/AKT, MAPK/ERK, JAK/STAT, NF-κB, and Wnt/β-catenin pathways (Yan et al., 2017). Birt et al. first reported APG’s antitumor efficacy in 1986 (Birt et al., 1986). In the A549 human lung cancer cell, APG suppressed the migration and invasion by inhibiting the phosphorylation of AKT and modulating the PI3K/Akt signaling pathway (Zhou et al., 2017). In three kinds of colorectal adenocarcinoma cell lines (SW480, DLD-1 and LS174T), APG decreased the phosphorylation of AKT Ser473 and ATK Thr308 to upregulate transgelin and downregulate matrix metallopeptidase-9 (MMP-9) expression for the inhibition of tumor growth and metastasis to the liver and lung (Chunhua et al., 2013). High deposition of visceral adipose tissue (VAT) known as visceral obesity is directly associated with metabolic syndrome, breast cancer, and endometrial cancer. Su et al. investigated that APG bound to nonphosphorylated STAT3 but reduced the phosphorylation of STAT3 and transcriptional activity in VAT, in contrast to high-fat diet-increased STAT3 phosphorylation in VAT (Su et al., 2020). Consequently, APG reduced the expression of STAT3 target gene cluster of differentiation 36 (CD36) and peroxisome proliferator-activated receptor gamma, leading to reduced body weight and VAT. Chen et al. have reported that bear powder significantly inhibited STAT3 phosphorylation and regulated Bcl-2. Cyclin D1, VEGF-4, and CDK4 resulted in cell apoptosis, cell proliferation, and vessel density in hepatocellular carcinoma tumor tissues (Chen et al., 2020).
Epigenetic Modifications Interfered by Herbal Medicines
Three major epigenetic modulations of gene expression, including DNA methylation, histone modifications, and miRNA expression, play a pertinent role in the response to several anticancer treatments of herbal medicines. DNA methylation is the first characterized by covalent modification of DNA, mediated by DNA methyltransferase (DNMT) enzymes, including DNMT1, DNMT3A, and DNMT3B. Diverse histone PTMs may involve methylation, acetylation, ADP-ribosylation, ubiquitination, and sumoylation in either the N- or C-terminal tail domains, to influence the chromatin structure and function that facilitates gene transcription. Micro RNAs (19–25 nucleotide length) work in the stable maintenance of epigenetic landscape, by inducing transcriptional degradation or blocking translation to posttranslational regulation of mRNA function (Gomes et al., 2013). Similar to the drugs currently in clinical trials, the epigenetic herbal medicines mainly target DNA methylation and histone acetylation for combating several cancers (Fig. 5).
Epigenetic molecular targets regulated by herbals in cells. The dynamic and reversible nature of epigenetic regulation highlighting the coordinated interplay among writers, erasers, readers, and other factors that orchestrate complex gene expression patterns and cellular functions. Histone modifications play a crucial role, with writers such as histone acetyltransferases and methyltransferases adding PTMs to histone tails, leading to changes in chromatin structure and gene expression. Conversely, erasers such as histone deacetylases and demethylases remove PTMs from histones, reversing the effects of writers and thereby altering gene expression. Readers, which are proteins that recognize and bind to specific PTMs on histones, facilitate the formation of protein complexes and regulate gene expression, with their interaction with PTMs influencing chromatin architecture and transcriptional outcomes. DNA methylation also plays a role, with DNA methyltransferases being enzymes that add methyl groups to DNA, typically leading to gene silencing. In addition, micro-RNAs, small noncoding RNAs, can regulate gene expression posttranscriptionally by binding to messenger RNAs (mRNAs) and promoting their degradation or inhibiting their translation. Furthermore, histone acetylases and deacetylases modulate the acetylation status of histones, resulting in either the activation or inhibition of transcription depending on the specific context and location of the acetylation.
Evodiamine (EVO) (Chinese name: Wu-Chu-Yu), an indoloquinazoline alkaloid from the dried unripe fruit of herbal Evodia rutaecarpa Bentham., has a long history for the treatment of pain, amenorrhea, and various human cancers (Panda et al., 2023; Wang et al., 2019). The anticancer effects of EVO against cancers are usually carried out by the inhibition of abnormal cell proliferation and the activation of the apoptotic pathway (Jiang and Hu, 2009; Zhu et al., 2019a). EVO exhibits substantial pharmacological activities, including analgesia, anticardiovascular disease, vasodilatory, antitumor, anti-inflammatory, antinociceptive, and antiobesity effects (Guo et al., 2016; Kobayashi et al., 2001; Tan and Zhang, 2016; Zhao et al., 2015). A study of insulin resistance in obesity/diabetes investigated that EVO significantly inhibited the rapamycin (mTOR) signaling and ribosomal S6 protein kinase phosphorylation to improve glucose tolerance and prevent insulin-resistance progress (Wang et al., 2014b). In contrast to the roles in metabolism energy, numerous biological roles in several diseases give EVO an epigenetic regulatory role in distinct cancer, including DNA methylation, histone methylation, and deacetylation. Our study have evaluated the in vivo and in vitro antilung cancer mechanisms of EVO: it enhanced the DNMT (DNMT3A and DNMT3B) levels via highly methylated promoter region of Notch3, thus inhibiting Notch3 signaling (Su et al., 2018). Zhu et al. showed that EVO also inhibited the PRAME (preferentially expressed antigen in melanoma) expression in HepG2 cells through trimethylation of histone H3K27 (Zhu et al., 2019b). Another study by Shi et al. revealed that EVO decreased the histone deacetylase 3 (HDAC3) expression but increased NF-kB and p53 in HCT116 human colon cancer cell and xenograft tumor, similar to a previous study of EVO modulating the activity of p53 signaling pathway to inhibit HCT116 migration (Zhao et al., 2015).
Curcumin, a yellow polyphenol in turmeric from the Curcuma longa, is a common ingredient in dietary supplement. Although little evidence of curcumin impacts on the DNA methylation markers, some research observations suggested that DNMT1 was inhibited by curcumin treatment in leukemia cell, ovarian cancer cell, bladder cancer cell, MCF7 breast cancer cell, and melanoma cell (Smith et al., 2015). Curcumin treatment-stimulated hypoacetylation of histone H3 and H4 has caused the inhibition of p300 activity in the TREM-1 promoter (Yuan et al., 2012), and also dramatically decreased HAT activity and the level of p300 and acetylated CBP/p300 gene expression, and induced HDAC2 expression (Yun et al., 2011). Curcumin has also been shown in the upregulation of miR181b, miR-34a, miR-16, miR-15a, and miR-146b-5p, and in the downregulation of miR-19a and miR-19b, leading to the suppression of tumorigenesis, metastasis, and apoptosis in breast cancer (Norouzi et al., 2018).
Similarly, various anticancer herbal medicines as DNA intercalators could induce DNA double breaks and PARP cleavage or increase H2A.X histone levels, such as polyphenolic compounds with flavonoids (Limoniastrum guyonianum polyphenolic extract, Leonurus sibiricus extract, Rhaponticum carthamoides transformed root extract) (Abbas et al., 2020; Sitarek et al., 2018). As phosphorylation also is a critical histone modification of chromatin remodeling, the phosphorylation of H2A.X Ser139 is observed in response to DNA double-strand breaks (Komar and Juszczynski, 2020). For example, resveratrol (trans-3,4’,5-trihydroxystilbene), a natural polyphenol, has caused the formation of γ-H2A.X foci to break DNA double strands in HCT-116 colon carcinoma cells (Demoulin et al., 2015). Chlorogenic acid with known antioxidant properties, is a plant polyphenol found in coffee, which increased levels of phosphorylated H2A.X in leukemia cells to cause a DNA damage (Burgos-Moron et al., 2012). Celastrol, a pentacyclic triterpene extracted from Tripterygium wilfordii, has emerged as a neuroprotective agent with its antioxidative and anti-inflammatory effects. In combination with histone deacetylase inhibitors (HDACi), celastrol treatment synergistically suppressed cancer cell proliferation through upregulating H4K16 acetylation, and H3K trimethylation and H3S10 phosphorylation on lung cancer cell allografts in mice (Chen et al., 2022). Luteolin, a natural herbal flavonoid with potential antioxidant, apoptosis-inducing anti-inflammatory, and chemopreventive activities, has specifically indicated a significant inhibition of the proliferation and metastasis in androgen receptor-positive TNBC (Wu et al., 2021b). It reduced MMP-9 expression by decreasing the levels of AKT/mTOR-inducing H3K27 acetylation and H3K56 acetylation on the MMP-9 promoter region.
Based on the above reports, we expect that many studies will further elucidate the underlying understanding of herbal medicines as an anticancer drug in epigenetic changes.
ROS-Associated PTMs Using Herbal Medicines
ROS in oxidative stress and redox signaling
Aerobic respiration is a highly efficient ways of energy production to develop all eukaryotes, in which the generation of reactive oxygen species (ROS) is an inevitable by-product that confers reactivity to different targets. ROS contain the superoxide anion (O2–), hydrogen peroxide (H2O2), and hydroxyl radicals (OH⋅) produced as natural by-products of cellular metabolism (Finkel, 2003). If the imbalance between oxidative and antioxidative systems of cells and tissues is disrupted, overproduction of oxidative-free radicals and the associated ROS leads to oxidative stress, which is also a major apoptotic stimulus in cancer cells. Therefore, ROS are widely considered the second messenger in the processes of cell proliferation, differentiation, and apoptosis (Freinbichler et al., 2011).
Notably, many herbal medicines such as flavonoids, polyphenols, and alkaloids, have been found to possess antioxidant or anti-inflammatory properties to reduce the ROS levels and alleviate oxidative stress. For example, curcumin, the active compound in turmeric, has been used to scavenge ROS and activate antioxidant enzymes, to attenuate oxidative stress-induced carbonylation, nitrosylation, and phosphorylation. Rutin, a flavonoid, exhibits antioxidant effects and can scavenge ROS to attenuate oxidative stress-induced glycation and lipid peroxidation for anticancer. In this part, we focus on the research of herbal potential to modulate ROS and ROS-associated PTMs to open new avenues for the understanding and treatment of human cancer pathologies (Fig. 6).
Herbal-regulated oxidative stress and protein modification in cells. Various factors such as mitochondria, UV/radiation, inflammation, metabolism, air pollution, smoking, and NADPH oxidase can promote the generation of ROS, thereby exacerbating oxidative stress. However, antioxidant regulation can counteract oxidative stress and modulate critical cellular processes such as proliferation, cell death, cell differentiation, immune evasion, genetic alterations, and cell survival. The ROS-related posttranslational modifications depicted include lipid-associated prenylation and palmitoylation, electrophile/aldehyde-related Michael addition and alkylation, irreversible modifications such as sulfenylation and sulfonylation, as well as reversible modifications, including S-cysteinylation, S-glutathionylation, disulfide formation, sulfenylation, nitrosylation, and sulfhydration. ROS, reactive oxygen species.
ROS-associated PTMs
During oxidative stress and redox signaling processes, ROS could modify redox-sensitive residues in proteins. For instance, H2O2 mediated oxidation of cysteine residues on proteins (Rhee, 2006), of which thiolate anions (Cys-S-) are more susceptible to oxidation at physiological pH. ROS can also be detoxified by several kinds of antioxidants, based on both enzymatic and nonenzymatic mechanisms, for example, superoxide dismutase (SOD), catalase, peroxiredoxin, glutathione peroxidase, and sulfiredoxin. These common ROS-induced PTMs (oxidation, phosphorylation, carbonylation, nitrosylation, and glycation) have significant effects on cellular processes, PPIs, and disease processes, while excessive ROS levels with its induced PTMs can contribute to some pathological conditions in the cancer cellular context.
Here are three examples of ROS-associated PTMs not mentioned above: Oxidation, ROS can directly oxidize residues in proteins, such as cysteine oxidation (disulfide bond formation, sulfenic acid [SOH], sulfinic acid [SO2H], or sulfonic acid [SO3H]), methionine oxidation, and tyrosine nitration. Nitrosylation, nitric oxide (NO) and peroxynitrite (ONOO−), can react with reactive nitrogen species to conjugate a nitric oxide group (−NO) to the cysteine thiol groups in proteins (Nathan, 2023). Glycation, is associated with some destructive chemical reactions that generate intermediates, including Schiff base (aldimine) and Amadori species to produce ROS, leading to the advanced glycation end-products (AGEs) (Alaei et al., 2024; Cepas et al., 2020). ROS-associated PTMs can either promote or modulate cellular responses to oxidative stress, depending on the context and extent of ROS production, so studying these PTMs and their functional consequences provides insights into the complex interplay between ROS and cellular processes under herbal medicines.
Antioxidants in herbal medicines
Herbal medicines often contain various natural compounds that exhibit antioxidant properties to help neutralize ROS and reduce oxidative stress in the body.
Sideritis scardica, an endangered plant species endemic to the central part of the Balkan Peninsula, is known for its antioxidant, neuroprotective, and anti-inflammatory properties (Tasheva et al., 2023). The higher content of polyphenols and flavonoids underlies the higher antioxidant activity with the antitumor effects.
Salidroside, a phenolic glycoside from Rhodiola rosea, has been shown to have some potent pharmacological effects on antioxidative stress, anti-inflammation, anticancer, antifatigue, and myocardial injury (Zhang et al., 2021b). As oxidative stress plays a crucial role in carcinogenesis and metastasis, some studies found that salidroside displayed anticancer effect in A549 lung cancer cell through downregulating the ROS-phospho-p38 signaling pathway and inhibiting oxidative stress in a dose-dependent manner (Wang et al., 2014a), in which salidroside inhibited tumor invasion and suppressed the Snail protein expression to induce apoptosis. Moreover, salidroside could block the formation and growth of U251 glioma cell in vitro and in vivo, as well as improve the tumor microenvironment by inhibiting oxidative stress and astrocyte overgrowth.
Tanshinone IIA (TIIA), extracted from the traditional Chinese herbal medicine Danshen, has potential activity against a variety of cancers, such as liver cancer, leukemia, lung cancer, cervical cancer, bladder cancer, colorectal cancer, and stomach cancer. Yin et al. found that the heat shock protein 27 (HSP27) Ser82 was phosphorylated after TIIA reaction, resulting in ROS production and UPR. TIIA-treated cells induced an overproduction of ROS, which is essential to prevent genomic instability and DNA damage in various cancer types. Elevated ROS production induces antitumor signaling, leading to a variety of biological effects, including cell cycle arrest, apoptosis, and UPR. TIIA can promote cancer cell death by producing ROS and inducing UPR (Yin et al., 2020).
The tumor suppressor protein p53 is a class of transcription factors that are sensitive to redox. Oxidative stress, especially when cellular DNA is damaged, causes upregulation of p53 gene expression, manifested by accelerated translation of mRNA and PTMs. It affects the regulation of many posttranslational levels such as phosphorylation, acetylation, ubiquitination, and SUMOylation to change the conformation, localization, and interaction of p53 proteins, thereby improving its stability and activity (Lavin and Gueven, 2006). In this study, ursolic acid (UA) is an extract of a variety of traditional Chinese medicinal plants such as summer hay, hawthorn, and azalea, and studies have shown that UA has inhibitory effects on a variety of tumor cells. Hemozosis is a new way of death caused by iron-dependent oxidative damage in recent years; UA induces hemozois in ovarian cancer cells by upregulating p53 expression level, downregulating SLC7A11, reducing GSH level, and downregulating GPX4 expression. At the same time, UA can directly stimulate the increase of COX-2, promote the expression of ferritin heavy chain, significantly induce the production of oxidative stress, induce the occurrence of iron osis in cancer cells, and inhibit tumor growth (Ruan et al., 2021).
The anticancer agent adriamycin (ADR) is a commonly used chemotherapy drug to treat various cancers. However, the production of ROS caused by ADR can disturb the normal redox balance and produce huge oxidative stress, thereby stimulating carbonylation of specific protein groups involved in physiological dysfunction and inducing apoptosis of cardiomyocytes, and thus its severe cardiotoxicity greatly limits its clinical application. In addition, Salvia miltiorrhiza (SM) has long been used to treat cardiovascular disease. The water-soluble components extracted from SM, including salvianolic acids A, B and C, have significant antioxidant effects against free radicals. Salvia miltiorrhiza aqueous extract (SMAE) has been widely used in the treatment of coronary heart disease, atherosclerosis, and ischemic cardiovascular disease. Studies have shown that SMAE could prevent oxidative damage by increasing the levels of SOD and catalase in H9C2 cells exposed to ADR. SMAE attenuates ROS-mediated apoptosis by regulating protein carbonylation and antioxidant systems, and in combination with ADR can partially alleviate ADR-induced cardiomyopathy (Hung et al., 2020) without affecting the efficacy of ADR. This finding also proved the advantage of the combination of Chinese herbal medicine with drugs.
Influence of herbal medicines on PTMs as antioxidant and anticancer
The exploration of herbal medicine in cancer therapy has increasingly focused on understanding how natural compounds influence cellular mechanisms to combat cancer. A critical area of interest is how these compounds impact antioxidant defense systems and redox signaling pathways, particularly through PTMs of proteins.
Quercetin, a naturally flavonoid, has been shown to attenuate inflammation-related signaling pathways, including ROS, nitric oxide, and proinflammatory cytokines, in prostate cancer (Pellegrino et al., 2023). In addition, it inhibits the production of AGEs and protein glycation in MCF-7 (Khan et al., 2021) and HCT116 cells (Hafsa et al., 2016). Quercetin directly interacts with SIRT5, leading to the inhibition of PI3K/AKT phosphorylation through the SIRT5-PI3K interaction in NSCLC (Zhou et al., 2023). Furthermore, it enhances the binding activity of the serum response factor transcription factor, thereby increasing the expression of DUSP5 at the transcriptional level (Boonruang et al., 2023). This, in turn, augments ERK phosphorylation in colorectal cancer. Moreover, quercetin has the potential to reverse the hypermethylation of P16INK4a and modulate the activity of DNA methylation enzymes, including DNMTs and histone methyltransferases, in bladder cancer cells and hepatocellular carcinoma (Qadir Nanakali et al., 2023).
Acteoside, a glycosylated phenylpropanoid derived from Syringa vulgaris (Oleaceae), has been reported to modulate DNA methylation levels, specifically increasing the methylation of SEC24D reduces its expression levels, thereby decelerating tumor progression (Du et al., 2023). It also attenuates the phosphorylation of p38 MAPK (Wu et al., 2021a) and reduces ROS production, lipid peroxidation, and protects mitochondrial functions (Sciandra et al., 2023; Zhang et al., 2022a). Furthermore, acteoside enhances the expression of nuclear factor erythroid 2-related factor 2 (NRF2), heme oxygenase-1 (HO-1), NADPH quinone oxidoreductase (NQO-1), and the glutamate cysteine ligase catalytic subunit. It concurrently decreases the activity of the NF-κB signaling pathway in A549 cells (Xiao et al., 2022; Zheng et al., 2021). This dual action of inhibiting oxidative stress and the NF-κB pathway suggests a protective role against oxidative damage by mitigating the ROS response.
Silybin, a flavonolignan derived from Silybum marianum, exhibits chemopreventive effects against various cancers through multiple mechanisms. It induces NO generation, apoptosis, and autophagy (Yu et al., 2012), and reduces the elevated levels of AGEs, their receptors, and ROS. Silybin also attenuates the phosphorylation of p38 MAP kinase (Karimi et al., 2022) and inhibits TLR4/NFκB-mediated signaling pathways, leading to the downregulation of proinflammatory mediators (Surai et al., 2024). In addition, it increases the phosphorylation of Jun N terminal kinase/c-Jun N-terminal protein kinases (JNK) and p-p38, significantly reducing the viability of human gastric cancer cells (Kim et al., 2019).
Daphnetin (DAP), a phenolic coumarin derivative sourced from the Daphne species, has been shown to augment the levels of GSH, glutathione S-transferase, SOD, and catalase, while reducing malondialdehyde levels. These actions contribute to the suppression of hepatic cancer by decreasing inflammatory mediators (Li et al., 2022). Furthermore, DAP activates the translocation of Nrf2 and upregulates antioxidant enzymes, including HO-1 and NQO1. It also promotes the phosphorylation of JNK, ERK, and P38, thereby alleviating oxidative stress and mitochondrial dysfunction (Fan et al., 2020; Kumar et al., 2016). This multifaceted mechanism of action aids in inhibiting nephrotoxicity in the kidneys and mammary carcinogenesis.
MS-Based Strategies of Herbal Medicines in Cancer Diseases
Herbal binding target is the mecanical basis of herbal medicines in cancer treatments, so to annotate and interpret herbal targets are the key work for the development of herbal medicines. However, most early research was based on biological or biochemical assays, including coimmunoprecipitation, X-ray, cocrystallization experiments. Following the high level of sensitivity and specificity in recent years, MS-based techniques become modern platforms for scientific connotation of herbal medicines. In addition, given the above strong associated relationship between PTMs and herbal-treatment cancers, it is necessary to exert proteomic techniques in the research of active ingredients, target proteins, molecular mechanisms, and drug discoveries of herbal treatment. In this review, we briefly reviewed and summarized two main strategies of proteomics for herbal medicines in recent years, including affinity purification–MS (AP-MS) (Fig. 7A) and chemical proteomics (Fig. 7B).
Morden tandem mass spectrometry (MS)-based strategies of target-site identification in herbal-based mechanism analysis. (A) The workflow of affinity purification mass spectrometry (AP-MS) involves enzymatic digestion of proteins, followed by antibody-based affinity enrichment and subsequent MS analysis for protein-site target identification. (B) A multiomics profiling analysis is utilized to investigate the effects of herbal treatments. For example, phosphoproteomic analysis focuses on identifying and quantifying phosphorylation sites (pSer, pTyr, and pThr) on protein peptides. Chemoproteomic analysis, utilizing chemical tags, could examine the interactions between herbal compounds and proteins, identifying target proteins and potential binding sites. Metabolomic analysis detects and quantifies intracellular metabolites to explore the effects on metabolic pathways. Ultimately, data from two or more of these omics approaches, including phosphoproteomics, chemoproteomics, metabolomics, and genomics, are integrated to provide a comprehensive understanding of the molecular mechanisms underlying the effects of herbal treatments.
First classical profiling strategy is AP-MS with a limited number of commercial antibodies for specific PTMs (Fig. 7A). Echinacoside (ECH) is a natural phenylethanoid glycoside from Cistanche tubulosa associated with a variety of therapeutic efficacies in mitochondrial dysfunction, antioxidative stress, regulating autophagy, and anti-inflammation. Zeng et al. have reported that ECH promoted mediated mitochondrial fusion by selectively binding the casein kinase 2 (CK2) α′ subunit (CK2α′) in a Wnt/β-catenin-dependent manner (Zeng et al., 2021). Furthermore, to comprehensively profile herbal–protein interactome, multiple MS-based omics studies could provide global herbal–protein interactions, including PTMs, and physical and functional interactions. Xu et al. with Rap as a stimulator integrated chemoproteomic, phosphoproteomic, and metabolomic profiling to reveal Rap’s complicated mechanism and its binding proteome (Xu et al., 2023).
Following PTM landscape, the second strategy is new chemical proteomics (Fig. 7B), in which some herbal medicines or small molecules decorated with functional groups have been recently used to identify PTMs and their new “writers,” “erasers,” and “readers,” such as activity-based protein profiling (ABPP), photoaffinity labeling, and proximity-based proteomics, then further mechanically validated by biological experiments. For example, Shi et al. have taken use of Wittig reagents (triphenylphosphonium ylides) for proteome-wide S-sulfenylation analysis to visualize redox-dependent changes in mitochondrial cysteine oxidation (Shi et al., 2021).
The flavonoid component baicalin, from Scutellaria baicalensis, has unique antisteatosis activity by activating the Wnt/β-catenin signaling pathway (Shin et al., 2015). The flavonoid family has >5000 members with diversified bioactivities in the prevention and treatment of hepatic steatosis and metabolic syndromes. To identify the baicalin targets, a photoaffinity baicalin probe containing two functional groups (a benzophenone photo-crosslinker and an alkynyl reporter) was designed and synthesized for ABPP represented by click chemistry. Also, then Dai et al. performed quantitative chemoproteomic profiling to identified carnitine palmitoyltransferase 1 that controls fatty acid oxidation (Dai et al., 2018).
Berberine (BBR) was a Chinese over-the-counter drug naturally extracted from Coptis chinensis. Recently, Zeng et al. designed 13 BBR-based chemical probes to directly target MAP2K7 protein by quantitative ABPP and cellular thermal shift assay methods (Zeng et al., 2022). BBR’s inhibition on the phosphorylation (p-JNK) significantly stimulated the c-Jun N-terminal protein kinase (JNK)/stress activated protein kinase pathway, to alleviate inflammation-related symptoms and exert effects in inflammatory, tumorous, and neurodegenerative diseases. It is the first demonstration of the unique mechanism of BBR to inhibit p-JNK with a good safety profile.
Tu groups designed small herb-derived probes of sappanone (from Caesalpinia sappan) (Liao et al., 2017) and handelin (from Chrysanthemum boreale) (Wang et al., 2017), to identify inosine monophosphate dehydrogenase 2 Cys140 and HSP70 Cys306 as druggable sites, respectively. Their findings provide great potential for the development of therapy herbs for various diseases. Interestingly, Wang et al. developed mangiferin-modified magnetic microspheres to capture and target 70 kDa HSPA5 and tyrosine 3-monooxygenase (YWHAE), which was bound by mangiferin to suppress the downstream (MAPK) signaling pathways in acute lung injury (Wang et al., 2015).
Altogether, these findings support herbal critical roles in human health and disease, beyond cellular modulation. Other than MS, the novel bioinformatic tools such as machine learning are also applied to predict potential PTM sites and their function features (Ju and Wang, 2020). In addition, proteomic studies on herbal-treatment cancers could provide a large amount of information on globally dynamic cellular processes. A comprehensive analysis in herbal-treated cancer will undoubtedly provide the identification of novel therapeutic targets.
Challenges and Prospects
Cancers have always been a major health problem threatening in a worldwide range and a great burden to the individual economy, but still a few effective drugs to prevent their aggravation and delay their progress. So, understanding the pathogenesis of herbal-treatment cancers and finding appropriate herbal medicines are urgently needed. PTMs in cancer play numerous pivotal roles in diverse epigenomic and physiological/pathological mechanisms, such as chromatin remodeling, signal transduction, splicing, immune response, and metabolic modulation. However, due to technological limitations, the complexity of cross talk, and coregulation between herbal components and targeted protein substrates, their research is still at an early stage with unclear questions. Advanced technological progress in the future may illuminate these mechanisms, providing stepwise insights into the multifunctional roles of PTMs in cancer influenced by herbal treatments. Furthermore, future studies should aim to bridge the current gaps in knowledge, harnessing advanced methodologies and interdisciplinary collaborations to further our understanding of how herbal medicines can modulate the complex molecular landscape of cancer for therapeutic benefit. We believe that future advanced progress may help to elucidate their multiple functions in a stepwise manner and boost the generation of new strategies in herbal treatment cancers.
Footnotes
Authors’ Contributions
R.W., Z.Q.L., and L.L.L. completed the proposal of the concept and obtained the support of the fund. R.W., Y.L., J.H.J., L.W.K., Y.K.H., and L.L.L. wrote the article. R.W., J.H.J., L.W.K., and Y.K.H., prepared the figures. R.W., Y.L., Z.Q.L., and L.L.L. revised the article. All authors have read and approved the final article.
Author Disclosure Statement
The authors declare that they have no conflicts of interest in this article.
Funding Information
This work was supported by the projects of the National Natural Science Foundation of China [82022074, 82274196, 81930114 and 22307084], the Talent Support Project of Guangdong [2021JC050230], the Shenzhen Science and Technology Program [JCYJ20230807151059004], and the Shenzhen High-tech Zone Development Special Plan Pingshan District Innovation Platform Construction Project [29853MKCJ202300208].
Abbreviations Used
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